Python Modules for Next-Generation Sequencing Data Analysis.
Project description
rngslib: R interface for NGS data analysis
Prerequisites:
R 3.2+ (down to 3.0 probably OK). When compiling R from source, do not forget to specify –enable-R-shlib at the ./configure step.
Python 3.4, with intended compatibility with 2.7 and 3.3.
readline
rpy2
Install rpy2:
- From source.
> tar -xzf <rpy_package>.tar.gz > cd <rpy_package> > python setup.py build install or > python setup.py build –r-home /opt/packages/R/lib install # give explicitly the location for the R HOME
- Binaries.
Get details from http://rpy2.readthedocs.org/en/version_2.7.x/overview.html#background.
Install rngslib:
> easy_install –prefix=$HOME/local rngslib
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