rngslib 1.0.0

Python Modules for Next-Generation Sequencing Data Analysis.

rngslib: R interface for NGS data analysis

Prerequisites:

1. R 3.2+ (down to 3.0 probably OK). When compiling R from source, do not forget to specify –enable-R-shlib at the ./configure step.

2. Python 3.4, with intended compatibility with 2.7 and 3.3.

3. readline

4. rpy2

Install rpy2:

1. From source.

   > tar -xzf <rpy_package>.tar.gz > cd <rpy_package> > python setup.py build install or > python setup.py build –r-home /opt/packages/R/lib install # give explicitly the location for the R HOME

2. Binaries.

   Get details from http://rpy2.readthedocs.org/en/version_2.7.x/overview.html#background.

Install rngslib:

> easy_install –prefix=$HOME/local rngslib