Time-evolution analysis of image intensity under specific mask geometries
Project description
roidynamics
Small Python package providing tools to analyze the dynamics of intensity in time-lapse microscopy images split into regions of specific geometries.
Installation
You can install this package directly using:
pip install roidynamics
Note: If you encounter errors when trying to use the ND2 format because of errors related to unusual ROIs (non-square), you can try to install an alternative version with:
pip install git+https://github.com/guiwitz/nd2reader.git@master#egg=nd2reader -U
Authors
This package has been created by Guillaume Witz, Data Science Lab, University of Bern in collaboration with Jakobus van Unen, Pertz lab, Institute of Cell Biology, University of Bern.
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