runjob 2.10.5

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runjob

Summary

runjob is a program for managing a group of related jobs running on a compute cluster localhost, Sun Grid Engine, BatchCompute . It provides a convenient method for specifying dependencies between jobs and the resource requirements for each job (e.g. memory, CPU cores). It monitors the status of the jobs so you can tell when the whole group is done. Litter cpu or memory resource is used in the login compute node.

OSCS

Software Requirements

python >=2.7.10, <3.11

Installation

The development version can be installed with (for recommend)

pip install git+https://github.com/yodeng/runjob.git

The stable release (maybe not latest) can be installed with

pypi:

pip install runjob -U

conda:

conda install -c bioconda runjob

User Guide

All manual instruction for runjob can be found in here.

Usage

You can run a quick test like this:

$ runjob -j doc/example.job

$ qs doc/example.job

$ qcs --help

$ runsge/runbatch --help

$ runsge0 --help

License

runjob is distributed under the BSD 3-clause licence.

Contact

Please send comments, suggestions, bug reports and bug fixes to [e-mail].

Todo

More functions will be improved in the future.