runman 0.2.0

Mange runs of stochastic simulations

Run Manager

Mange runs (mostly of stochastic simulations)

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Features

• Register a world, functions to be called on each timestep, and functions that perform logging

Quick Start

import runman

counter = []
def step(timestep):
    counter.append(timestep)
def log():
    print(counter[-1])
    return counter[-1]

run = runman.Run(assets=[counter, ], 
                 stepfns=[step, ],
                 logfns=[log, ], 
                 loginterval=2)
run.run(10)

Installation

Clone and install or pip install git+https://github.com/AllenCellModeling/runman.git

Documentation

For full package documentation please visit AllenCellModeling.github.io/runman.

Available under the Allen Institute Software License