Systems Biology iterative network building tool
Project description
rxnconcompiler is an iterative network building tool for Systems Biology.
Magdalena Rother, Sebastian Thieme, Ulrike Muenzner and Marcus Krantz
LEGAL DISCLAIMER
rxnconcompiler is released under the GPL license, a copy of which is included in the distribution (See COPYING for details).
This software is provided “as-is”. There are no expressed or implied warranties of any kind, including, but not limited to, the warranties of merchantability and fitness for a given application. In no event shall the authors be liable for any direct, indirect, incidental, special, exemplary or consequential damages (including, but not limited to, loss of use, data or profits, or business interruption) however caused and on any theory of liability, whether in contract, strict liability or tort (including negligence or otherwise) arising in any way out of the use of this software, even if advised of the possibility of such damage.
The authors take no responsibility for damage caused by this program or its components.
CREDITS
Magdalena Rother - architecture and unit tests and implementation Sebastian Thieme - model validation and testing Ulrike Muenzner - contribution into concepts Marcus Krantz - concept and supervision
ACKNOWLEDGEMENTS
Credit goes to our colleagues Falko Krause, Max Floettmann, David Jesinghaus, and Janina Linnik for their comments, ideas and support during development.
REFERENCES
Magdalena Rother, Ulrike Muenzner, Sebastian Thieme and Marcus Krantz
Information content and scalability in signal transduction network reconstruction formats. Molecular BioSystems, DOI: 10.1039/C3MB00005B (2013)
FOR DEVELOPERS
When using the repository version modify your ~/.bashrc :
PYTHONPATH=$PYTHONPATH:/path/to/main/rxnconcompiler/: /path/to/rxnconcompiler/tests/ export PYTHONPATH
To be able to run acceptance tests with BioNetGen, install the BioNetGen software and add to ~/.bashrc : BNG_PATH=/path/to/BioNetGen-2.2.2-stable/ export BNG_PATH
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