saplings 4.2.0

Static analysis tool for Python

saplings is a static analysis tool for Python. Given a program, saplings will build object hierarchies for every module imported in the program. Object hierarchies are dependency trees where the root node represents a module and each child represents an attribute of its parent. These can be useful for making inferences about a module's API, mining data about how a module is used, and type inference.

• Object hierarchies or attribute trees?
• Tracks modules by default, but build trees for any objects
• Why is it unique? Can track object flow through many complex paths through a program without executing it

Installation

Requires Python 3.X.

You can install saplings with pip:

$ pip install saplings

Usage

Using saplings takes only two steps. First, convert your input program into an Abstract Syntax Tree (AST) using the ast module. Then, import the Saplings object and initialize it with the root node of the AST.

import ast
from saplings import Saplings

my_program = open("path_to_your_program.py", "r").read()
program_ast = ast.parse(my_program)
my_saplings = Saplings(program_ast)

That's it. To access the object hierarchies, simply call the get_trees method in your Saplings object, like so:

my_saplings.get_trees() # => [ObjectNode(), ObjectNode(), ..., ObjectNode()]

For more advanced usage of the Saplings object, read the docstring here.

Printing an Object Hierarchy

get_trees returns a list of ObjectNodes, each representing the root node of an object hierarchy and which has the following attributes:

• name (str): Name of the object
• is_callable (bool): Whether the object is callable (i.e. has __call__ defined)
• order (int): Indicates the type of connection to the parent node (e.g. 0 is an attribute of the parent, 1 is an attribute of the output of the parent when called, etc.); -1 if node is root
• frequency (int): Number of times the object is used in the program
• children (list): List of child nodes

To pretty-print a tree, simply pass its root node into the render_tree generator, like so:

from saplings import render_tree

trees = my_saplings.get_trees()
root_node = trees[0]
for branches, node in render_tree(root_node):
  print(f"{branches}{node}")

numpy (NC, -1)
 +-- random (NC, 0)
 |   +-- randn (C, 0)
 |       +-- __sub__ (C, 1)
 |       |   +-- shape (NC, 1)
 |       |   +-- __index__ (C, 1)
 |       +-- sum (C, 1)
 +-- matmul (C, 0)
 +-- expand_dims (C, 0)
     +-- T (NC, 1)

(Here, NC means indicates a non-callable node and C a callable node. -1/0/1 indicate the order of the node's connection to its parent).

To create a dictionary representation of a tree, pass its root node into the dictify_tree function, like so:

from saplings import dictify_tree

dictify_tree(root_node)

{
  "numpy": {
    "is_callable": False,
    "order": -1,
    "frequency": 1,
    "children": [
      {"random": ...},
      {"matmul": ...},
      {"expand_dims": ...}
    ]
  }
}

Interpreting the object hierarchy

Each node is an object and an object can either be callable (i.e. has __call__ defined) or non-callable. Links between nodes each have an order –– a number which describes the relationship between a node and its parent. If a node is a 0th-order child of its parent object, then it's an attribute of that object. If it's a 1st-order child, then it's an attribute of the output of the parent object when it's called, and so on. For example:

my_parent = module.my_obj

my_parent.attr # attr is a 0th-order child of my_obj
my_parent().attr # attr is a 1st-order child of my_obj
my_parent()().attr # attr is a 2nd-order child of my_obj

What counts as a function?

In Python, subscripts, comparisons, and binary operations are all just syntactic sugar for function calls, and are treated by saplings as such. Here are some example "translations:"

my_obj['my_sub'] # => my_obj.__index__('my_sub')
my_obj + 10 # => my_obj.__add__(10)
my_obj == None # => my_obj.__eq__(None)

Limitations

Saplings statically analyzes the usage of a module in a program, meaning it doesn't actually execute any code. Instead, it traverses the program's AST and tracks "object flow," i.e. how an object is passed through a program via variable assignments and calls of user-defined functions and classes. To demonstrate this idea, consider this example of currying and the tree saplings produces:

import torch

def compose(g, f):
  def h(x):
    return g(f(x))

  return h

def F(x):
  return x.T

def G(x):
  return x.sum()

composed_func = compose(F, G)
composed_func(torch.tensor())

Saplings identifies tensor as an attribute of torch, then follows the object as it's passed into composed_func. Because saplings has an understanding of how composed_func is defined, it can analyze how the object is used within the function and capture the T and sum sub-attributes.

While saplings can track object flow through many complex paths in a program, I haven't tested every edge case, and there are some situations where saplings produces inaccurate trees. Below is a list of all the failure modes I'm aware of (and currently working on fixing). If you discover a bug or missing feature that isn't listed here, please create an issue for it.

Data Structures

As of right now, saplings can't track assignments to comprehensions, generator expressions, dictionaries, lists, tuples, or sets. It can, however, track object flow inside these data structures. For example, consider the following:

import numpy as np

vectors = [np.array([0]), np.array([1]), np.array([2])]
vectors[0].mean()

Saplings can capture array and add it to the numpy object hierarchy, but it cannot capture mean, and thus produces the following tree:

This limitation can have some unexpected consequences. For example, functions that return multiple values with one return statement (e.g. return a, b, c) are actually returning tuples. Therefore, the output of those functions won't be tracked by saplings. The same logic applies to variable unpacking with * and **.

Control Flow

Handling control flow is tricky. Tracking object flow in loops and conditionals requires making assumptions about what code actually executes. For example, consider the following:

import numpy as np

for x in np.array([]):
  print(x.mean())

Because saplings only does static analysis and not type inference, it doesn't know that np.array([]) is an empty list, and that therefore the loop never executes. In this situation, capturing mean and adding the __index__ -> mean subtree to numpy -> array would be a false positive, since x (i.e. the output of np.array().__iter__()) is never defined. To handle this, saplings should branch out and produce two possible trees for this module –– one that assumes the loop doesn't execute, and one that assumes it does:

But as of right now, saplings will only produce the tree on the right –– that is, we assume the bodies of for loops are always executed (because they usually are).

Below are the assumptions saplings makes for other control flow elements.

while loops

while loops are processed under the same assumption as for loops –– that is, the body of the loop is assumed to execute, even if the loop condition evaluates to False.

if/else blocks

Saplings processes if and else blocks more conservatively than loops. It tracks object flow within these blocks but doesn't allow changes to the namespace to persist into the parent scope. For example, given:

import numpy as np

X = np.array()
if condition:
  X = np.matrix()
else:
  X.mean()
  X = None
  Y = np.array()

print(X.sum())
print(Y.max())

saplings will produce the following tree:

Notice how the value of X becomes ambiguous after we exit the if block, since we don't know if condition evaluates to True or False. To handle this, saplings simply stops tracking any variable that's defined in the outer scope, like X, if it's modified inside an if/else block. Similarly, notice how there exists an execution path where Y is never defined and Y.max() throws an error. To handle this, saplings assumes that any variable defined inside an if/else block, such as Y, doesn't persist into the outer scope.

Both of these assumptions are made in attempt to reduce false positives and false negatives. But ideally, saplings would branch out and produce two separate trees for this module –– one that assumes the if block executes and another that assumes the else block executes, like so:

try/except blocks

try/except blocks are handled similarly to if/else blocks –– that is, changes to the namespace made in either block do not persist in the outer scope.

Notably, try and else blocks are treated as a single block, since else is only executed if try executes without exceptions. And finally blocks are treated as separate from the control flow, since code in here always executes regardless of whether an exception is thrown.

return, break, and continue statements

All code underneath a return, break, or continue statement is assumed not to execute and will not be analyzed. For example, consider this:

import numpy as np

for x in range(10):
  y = np.array([x])
  continue
  y.mean()

It may be the case that mean is actually an attribute of np.array, but saplings will not capture this since y.mean() is never executed.

Notably, saplings doesn't apply this assumption to statements inside control flow blocks. For example, if the continue statement above was changed to:

if condition:
  continue

Then mean would be captured by saplings as an attribute of np.array.

Functions

Recursion

Saplings cannot process recursive function calls. Consider the following example:

import some_module

def my_recursive_func(input):
  if input > 5:
    return my_recursive_func(input - 1)
  elif input > 1:
    return some_module.foo
  else:
    return some_module.bar

output = my_recursive_func(5)
output.attr()

We know this function returns some_module.foo, but saplings cannot tell which base case is hit, and therefore can't track the output. To avoid false positives, we assume this function returns nothing, and thus attr will not be captured and added to the object hierarchy. The tree saplings produces is:

Generators

Generators aren't processed as iterables. Instead, saplings ignores yield/yield from statements and treats the generator like a normal function. For example, given:

import some_module

def my_generator():
  yield from some_module.some_items

for item in my_generator():
  print(item.name)

__index__ -> name won't be added as a subtree to some_module -> some_items, and so the tree produced by saplings will look like this:

Notably, this limitation will only produce false negatives –– not false positives.

Anonymous Functions

While the bodies of anonymous (lambda) functions are processed, object flow through assignments and calls of those functions is not tracked. For example, given:

import numpy as np

trans_diag = lambda x: np.diagonal(x.T)
trans_diag(np.random.randn(5, 5))

saplings will produce the following tree:

Notice that T is not captured as an attribute of numpy.random.randn, but diagonal is captured as an attribute of numpy. This is because the body of the lambda function is processed by saplings, but the assignment to trans_diag is not recognized, and therefore the function call is not processed.

Classes

Saplings can track object flow in static, class, and instance methods, getter and setter methods, class and instance variables, classes defined within classes, and class closures (i.e. functions that return classes). Notably, it can keep track of the state of each instance of a user-defined class. Consider the following program and the tree saplings produces:

import torch.nn as nn
from torch import tensor

class Perceptron(nn.Module):
  loss = None

  def __init__(self, in_channels, out_channels):
    super(Perceptron, self).__init__()
    self.layer = nn.Linear(in_channels, out_channels)
    self.output = Perceptron.create_output_layer()

  @staticmethod
  def create_output_layer():
    def layer(x):
      return x.mean()

    return layer

  @classmethod
  def calculate_loss(cls, output, target):
    cls.loss = output - target
    return cls.loss

  def __call__(self, x):
    x = self.layer(x)
    return self.output(x)

model = Perceptron(1, 8)
output = model(tensor([10]))
loss = Perceptron.calculate_loss(output, 8)

While saplings can handle many common usage patterns for user-defined classes, such as the ones above, there are some things saplings can't handle yet. Below are all the limitations I'm aware of:

Class Modifications

In the example above, calling the class method Perceptron.calculate_loss should change the value of the class variable loss. However, saplings cannot track modifications to a class when it's passed into a function. Saplings can handle when a class is modified in the scope in which it was defined, like so:

Perceptron.loss = tensor()
Perceptron.loss.item()

Here, item would be captured and added to the tree as an attribute of tensor. But if the class is modified via an alias, like so:

NeuralNet = Perceptron
NeuralNet.loss = tensor()
Perceptron.loss.item()

Then saplings won't capture item. Saplings also can't propagate class modifications to existing instances of the class. For example, continuing the code above:

model = Perceptron(1, 8)
Perceptron.loss = tensor()
model.loss.item()

Because the change to loss, a class variable, won't propagate to model, an instance of Perceptron, item won't be captured as an attribute of tensor.

Inheritance

Saplings cannot recognize inherited methods or variables in user-defined classes. For example, given:

import some_module

class MyClass(module.Foo):
  def __init__(self, x):
    self.bar(x)

saplings will not recognize bar as an attribute of module.Foo, despite bar being an inherited method. This limitation also holds true when the base class is user-defined.

Metaclasses

Once I learn what metaclasses actually are and how to use them, I'll get around to handling them in saplings. But for now this is on the bottom of my to-do list since 99.9% of Python users also don't know what the hell metaclasses are.

Miscellaneous

global and nonlocal statements

global statement are used inside functions to declare a variable to be in the global namespace. But saplings doesn't recognize these statements and change the namespace accordingly. For example, given:

import some_module

my_var = some_module.foo

def my_func():
  global my_var
  my_var = None

my_func()
my_var.bar()

saplings will produce a tree with bar as an attribute of foo. This would be a false positive since calling my_func sets my_var to None, and of course None doesn't have bar as an attribute.

nonlocal statements are similar to globals, except they allow you to modify variables declared in outer scopes. And like globals, saplings doesn't recognize nonlocal statements.

Built-in functions

None of Python's built-in functions are recognized by saplings. For example, consider the enumerate function:

import some_module

for index, item in enumerate(some_module.items):
  print(item.some_attr)

saplings won't capture attr as an attribute of some_module.items.__iter__, which it would have if some_module.items wasn't wrapped by enumerate.