savnet 0.4.0
pip install savnet
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Python tools for detecting mutations causing splicing changes
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- License: GNU General Public License v3 (GPLv3) (GPLv3)
- Author: Yuichi Shiraishi
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SAVNet
Introduction
SAVNet is a software for extracting splicing associated variants (SAVs) from somatic mutation, splicing junction and intron retention data. This software has been used for large-scale exome-transcriptome sequence analysis:
A comprehensive characterization of cis-acting splicing-associated variants in human cancer, Shiraishi et al., Genome Research, 2018, [link].
Documentation
The documentation for SAVNet is available here.
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Unverified details
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- License: GNU General Public License v3 (GPLv3) (GPLv3)
- Author: Yuichi Shiraishi
Classifiers
- Development Status
- Intended Audience
- License
- Operating System
- Programming Language
- Topic
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