Skip to main content

sbmlsim are utilities for simulation of SBML.

Project description

sbmlsim: SBML simulation made easy

GitHub Actions CI/CD Status Current PyPI Version Supported Python Versions GNU Lesser General Public License 3 Codecov Documentation Status Zenodo DOI Black

sbmlsim is a collection of python utilities to simulate to simplify simulations with SBML models implemented on top of roadrunner. Source code is available from

Features include among others

  • simulation experiments
  • simulation reports
  • parameter fitting

The documentation is available on If you have any questions or issues please open an issue.

How to cite

Zenodo DOI


The sbmlsim source is released under both the GPL and LGPL licenses version 2 or later. You may choose which license you choose to use the software under.

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License or the GNU Lesser General Public License as published by the Free Software Foundation, either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.


Matthias König is supported by the Federal Ministry of Education and Research (BMBF, Germany) within the research network Systems Medicine of the Liver (LiSyM, grant number 031L0054).


sbmlsim is available from pypi and can be installed via:

pip install sbmlsim


HDF5 support is required which can be installed on linux via:

sudo apt-get install -y libhdf5-serial-dev

Develop version

The latest develop version can be installed via:

pip install git+

Or via cloning the repository and installing via:

git clone
cd sbmlsim
pip install -e .

To install for development use:

pip install -e .[development]

© 2019-2020 Matthias König

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for sbmlsim, version 0.1.11
Filename, size File type Python version Upload date Hashes
Filename, size sbmlsim-0.1.11-py2.py3-none-any.whl (2.2 MB) File type Wheel Python version py2.py3 Upload date Hashes View
Filename, size sbmlsim-0.1.11.tar.gz (2.1 MB) File type Source Python version None Upload date Hashes View

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page