sc-toolbox 0.12.3

A collection of project templates and useful code snippets for single-cell data analysis with Scanpy.

sc-toolbox

Warning

This package is not properly maintained. It was primarily used for in-house analyses at the Theislab and Schillerlab. Do not expect it to be well tested or documented. However, contributions are welcome and we will provide guidance if required.

Features

• Create minimal containers for single-cell data analysis with Scanpy

• API for advanced Scanpy based plots and analyses

Installation

You can install sc-toolbox via pip from PyPI:

$ pip install sc-toolbox

Usage

import sc_toolbox.api as sct

Please see the Usage documentation.

Credits

This package was created with cookietemple using cookiecutter based on Hypermodern_Python_Cookiecutter. Most scripts were developed by Meshal Ansari and the package was designed by Lukas Heumos.