An adapted version of the Scanorama package by Brian Hie, Bryan Bryson, and Bonnie Berger for application to CytoTRACE.
Project description
Scanorma for CytoTRACE (ScanoramaCT)
scanoramaCT.py is an adapted version of the original Scanorama code for application to CytoTRACE. The code has been modified to adjust the aligned gene count vectors using Gaussian kernel normalization. CytoTRACE is then applied to the Scanorama-adjusted gene counts and expression matrix.
scanoramaCT is now available within the CytoTRACE codebase and web framework (CytoTRACE GitHub).
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