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Single-Cell Analysis in Python.

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Scanpy – Single-Cell Analysis in Python

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Scanpy is a scalable toolkit for analyzing single-cell gene expression
data. It includes preprocessing, visualization, clustering, pseudotime and
trajectory inference, differential expression testing and simulation of gene
regulatory networks. The Python-based implementation efficiently deals with
datasets of more than one million cells.

Read the `documentation <>`_.
If Scanpy is useful for your research, consider citing `Genome Biology (2018) <>`_.

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