single cell trajectory inference framework based on Entropic Gaussian mixture Optimal Transport

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Project description

scEGOT

single cell trajectory inference framework based on Entropic Gaussian mixture Optimal Transport

Fig_scEGOT_abstract

Installation

$ pip install scegot

Requirements

  • Python3

  • GraphViz

    Click here to learn how to install GraphViz (official documentation).

Documentation

The tutorial is available here.

Preprint

Please see the following paper: T. Yachimura et al. scEGOT: Single-cell trajectory inference framework based on entropic Gaussian mixture optimal transport. bioRxiv

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Release history Release notifications | RSS feed

0.2.2

This version

0.2.1

0.2.0

0.1.7

0.1.6

0.1.5

0.1.4

0.1.3

0.1.2

0.1.1

0.1.0

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scegot-0.2.1-py3-none-any.whl (17.1 kB view hashes)

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