Python helper functions for scFlow
Project description
scFlowPy is a helper package to bridge scFlow with the Python ecosystem. A typical use case is to allow tertiary scRNAseq analyses on scFlow outputs using Python tools (e.g. Tensorflow, PyTorch, Scanpy, and others).
The core function currently is provided by read_sce(), allowing users to read any SingleCellExperiment object output by scFlow (or by the nf-core/scflow pipeline) into the Annotated data (AnnData) format.
Free software: GNU General Public License v3
Documentation: https://scflowpy.readthedocs.io.
Credit
Written by Dr Combiz Khozoie for The Department of Brain Sciences, Imperial College London.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for scflowpy-0.7.4-py2.py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 523ecbf5e5e60ef8b82424264df493b8e2a6b3bd70316002e101630c8ccc2fe3 |
|
MD5 | f2c944c5d4ea2a8166f32995dd8dbbd1 |
|
BLAKE2b-256 | fd98d03ffd9945d6370af34e404437f32949d9c20478ca596409c07f551885ca |