scidmcli 0.0.6

NCHC SciDM

scidm cli

• 開發項目 https://git.narl.org.tw/gitlab/datamarket-team/twdm-dev/-/issues/200
• Wiki https://git.narl.org.tw/gitlab/datamarket-team/scidmcli/-/wikis/home
• Readme https://git.narl.org.tw/gitlab/datamarket-team/scidmcli/-/blob/master/README.md

一、 說明

開發資料服務平台 CLI 使用套件，提供以 Python pip 快速安裝並提供以命令列使用之工具。

二、 用法

2.1 安裝

直接使用 pip 即可完成安裝

pip install scidmcli

2.2 執行

scidmcli 指令

Options:
  -v, --version  Show scidm-cli version
  -h, --help     Show this message and exit.

Commands:
  config        Configure the SCIDM CLI [info|init|reset]    
  dataset       Manage dataset [list|files|download|create|push|delete]    
  organization  Manage organization [list]    
  user          Manage user [list|token]

scidmcli config 指令

Options:
  -h, --help  Show this message and exit.

Commands:
  info   Get exsisting information.
  init   Initialize the credential.
  reset  Reset the credential.

範例:
  scidmcli config info    檢視認證設定
  scidmcli config init --apikey {api_key}    初始化認證
  scidmcli config reset --apikey {api_key}    重設認證

  認證初始化後會儲存於~/.scidmcli/credential

scidmcli dataset 指令

Options:
  -h, --help  Show this message and exit.

Commands:
  create    create new dataset
  delete    delete dataset or resource
  download  download the resources of dataset
  files     list the resources of dataset
  list      list the datasets of organization
  push      upload resources

範例:
  scidmcli dataset create --data '{"name": "{dataset_name}", ... }'    建立資料集(JSON格式)
  scidmcli dataset delete --type [ds|rs] --id {dataset_name|resource_uid}    刪除資料集或資源
  scidmcli dataset download --id {dataset_name} --path {local_path}    下載資料集到指令路徑(預設~/.scidmcli/download)
  scidmcli dataset files --id {dataset_name}    列出資料集底下資源
  scidmcli dataset list --organization {org_name}    列出組織底下資料集
  scidmcli dataset push --data '{"package_id": "{dataset_name}", ... }'    上傳資源(JSON格式)

scidmcli dataset create詳細範例:
Args:
  - name (str): The name of the new dataset. Must be between 2 and 100 characters long and contain only lowercase alphanumeric characters, - and _.
  - title (str, optional): The title of the dataset. If not provided, it defaults to the same value as the name.
  - private (bool): If True, creates a private dataset.
  - author (str, optional): The name of the dataset's author.
  - author_email (str, optional): The email address of the dataset's author.
  - maintainer (str, optional): The name of the dataset's maintainer.
  - maintainer_email (str): The email address of the dataset's maintainer.
  - owner_org (str): The id of the dataset's owning organization.

Example:
To create a new dataset, run the following command:

scidmcli dataset create -d '{"name": "warandpeace", "title": "War and Peace", "private": true, "author": "Leo Tolstoy", "author_email": "[e-mail]", "maintainer": "Publisher", "maintainer_email": "[e-mail]", "owner_org": "org1"}'

scidmcli dataset push詳細範例:

上傳資料可分成"檔案"或"連結"兩種，檔案以"upload"屬性作為判斷，連結以"url"屬性作為判斷，若"upload"和"url"兩個屬性都存在，則以"upload"為優先。

Args:
  - package_id (str): The id of the package that the resource should be added to.
  - name (str): The name of the resource.
  - url (str, optional): The URL of the resource.
  - upload (str, optional): The path to the file to be uploaded.
  - description (str, optional): The description of the resource.
  - format (str, optional): The format of the resource.

Example:
To upload a resource with URL, run the following command:

scidmcli dataset push -d '{"package_id": "test_dataset", "name": "test_resource", "url": "https://example.com/test_resource", "description": "This is a test resource.", "format": "csv"}'


To upload a resource with file, run the following command:

scidmcli dataset push -d '{"package_id": "test_dataset", "name": "test_resource", "upload": "/path/to/file.txt", "description": "This is a test resource.", "format": "csv"}'

scidmcli organization 指令

Options:
  -h, --help  Show this message and exit.

Commands:
  list  show organization

範例:
  scidmcli organization list    列出組織

scidmcli user 指令

Options:
  -h, --help  Show this message and exit.

Commands:
  list   list the organizations or datasets that the user has permission
  token  show user's token

範例:
  scidmcli user list --type [ds|org]    列出使用者有權限的組織或資料集
  scidmcli user token    檢視當前用戶的API key

三、 開發

3.1_ 開發工具包

pip install build twine

3.2_ 檔案結構

• README.md
• pyproject.toml
• src
  • scidmcli
    • __init__.py
    • example.py

3.3_ 打包

python -m build

3.4_ 上傳到 PypI

twine upload dist/*

3.5 測試 (安裝)

套件會裝在 python的 library 庫中，如 anaconda3/lib/python3.xx/site-packages/xx

pip install scidmcli

pip uninstall scidmcli

X、補充

X1_ (optional) 打包到 測試服 做測試

twine upload --repository-url https://test.pypi.org/legacy/ dist/*  --verbose

pip install --index-url https://test.pypi.org/simple/ --no-deps scidmcli

X2_ 用 token file 上傳到pypi

• ~/.pypirc

[distutils]
  index-servers =
    pypi

[pypi]
  username = __token__
  password = pypi-AgEIcH(....skip....)-P7f3FF-rbty7knQ

twine upload dist/*

X3_ 本地端測試

建議可以使用python虛擬環境來獨立測試

geosense@twdm:~$ python3 -m venv pyenv
geosense@twdm:~$ . pyenv/bin/activate

從git上clone

(pyenv) geosense@twdm:~$ git clone https://git.narl.org.tw/gitlab/datamarket-team/scidmcli.git

本地安裝

(pyenv) geosense@twdm:~$ cd scidmcli
(pyenv) geosense@twdm:~/scidmcli$ pip install -e . 

安裝完成

(pyenv) geosense@twdm:~/scidmcli$ scidmcli 
Usage: scidmcli [OPTIONS] COMMAND [ARGS]...

Options:
  -v, --version  Show scidm-cli version
  -h, --help     Show this message and exit.

Commands:
  config        Configure the SCIDM CLI [info|init|reset]
  dataset       Manage dataset [list|files|download|create|push|delete]
  organization  Manage organization [list]
  user          Manage user [list|token]

初始化憑證

scidmcli config init --apikey {api_key}

顯示憑證資訊

(pyenv) geosense@twdm:~/scidmcli$ scidmcli config info
Hi, your information:
+------------------+--------------------------------------+
| key              | value                                |
+------------------+--------------------------------------+
| scidm_data_path  | /home/geosense/.scidm_cli            |
| scidm_credential | /home/geosense/.scidm_cli/credential |
| scidm_api_key    | {api_key}                            |
| server_url       | https://twdm.nchc.org.tw/            |
+------------------+--------------------------------------+