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scikit-surgerycore contains commonly used Image Guided Surgery algorithms and tools

Project description

https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerycore/raw/master/project-icon.png GitLab-CI test status Test coverage Documentation Status

scikit-surgerycore implements algorithms and tools that are common to all scikit-surgery packages.

scikit-surgerycore is part of the SNAPPY software project, developed at the Wellcome EPSRC Centre for Interventional and Surgical Sciences, part of University College London (UCL).

Features

  • A Configuration Manager to load parameters from a .json file
  • A Transform Manager to manage combinations of 4x4 transformation matrices
  • Corresponding point (i.e Landmark) based registration, based on Arun et al., 1987.
  • Validation functions, checking a numpy array is a camera matrix, rotation matrix, rigid transform etc.

Installing

You can pip install as follows:

pip install scikit-surgerycore

Developing

Cloning

You can clone the repository using the following command:

git clone https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/scikit-surgerycore

Running the tests

You can run the unit tests by installing and running tox:

pip install tox
tox

Contributing

Please see the contributing guidelines.

Acknowledgements

Supported by Wellcome and EPSRC.

Project details


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