Collection of algorithms and functions for ultrafast electron scattering
Collection of algorithms and functions for ultrafast electron diffraction. It aims to be a fully-tested package taking advantage of Python's most recent features.
For examples, see our tutorials.
The API Reference on readthedocs.io provides API-level documentation, as well as tutorials.
scikit-ued is available on PyPI; it can be installed with pip:
python -m pip install scikit-ued
To also install optional dependencies required to view diffraction images interactively:
python -m pip install scikit-ued[diffshow]
scikit-ued is also available on the conda-forge channel for the conda package manager:
conda config --add channels conda-forge conda install scikit-ued
To install the latest development version from Github:
python -m pip install git+git://github.com/LaurentRDC/scikit-ued.git
After installing scikit-ued you can use it like any other Python module
Each version is tested against Python 3.7+. If you are using a
different version, tests can be run using the
For displaying diffraction images with interactive contrast using the
skued.diffshow function, PyQtGraph is required.
If you want to contribute to
scikit-ued, take a look at
Streaming operations on NumPy arrays are available in the npstreams package.
Interactive exploration of ultrafast electron diffraction data with the iris-ued package.
Crystal structure manipulation (including symmetry-determination) with the crystals package. (Included with scikit-ued)
A graphical user interface for the dual-tree complex wavelet transform baseline-removal routine is available as a separate package.
If you find this software useful, please consider citing the following publication:
L. P. René de Cotret, M. R. Otto, M. J. Stern. and B. J. Siwick, An open-source software ecosystem for the interactive exploration of ultrafast electron scattering data, Advanced Structural and Chemical Imaging 4:11 (2018) DOI: 10.1186/s40679-018-0060-y.
If you are using the baseline-removal functionality of scikit-ued, please consider citing the following publication:
L. P. René de Cotret and B. J. Siwick, A general method for baseline-removal in ultrafast electron powder diffraction data using the dual-tree complex wavelet transform, Struct. Dyn. 4 (2017) DOI: 10.1063/1.4972518.
Support / Report Issues
All support requests and issue reports should be filed on Github as an issue.
scikit-ued is made available under the GPLv3 License. For more details, see LICENSE.txt.
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