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Base pyworkflow plugin for Electron Diffraction image processing

Project description

scipion-ed is the base plugin defining the Domain for Electron Diffraction image processing.

Development

Before installing scipion-ed, we need scipion-pyworkflow, so during development one can do:

# Create a clean virtual environment
python -m venv ~/myenv
source ~/myenv/bin/activate
git clone git@github.com:scipion-em/scipion-pyworkflow.git
cd scipion-pyworkflow
python -m pip install -e .  # Install in the environment as development

# Then we can install scipion-ed by:
cd ..
git clone git@github.com:scipion-ed/scipion-ed.git
cd scipion-ed
python -m pip install -e .  # Install in the environment as development

Running tests

cd scipion-ed
cd pwed/tests
python -m unittest discover

# To visualize the test project you need to specify SCIPION_DOMAIN and SCIPION_VERSION
export SCIPION_DOMAIN=scipion-ed/pwed
export SCIPION_VERSION=3.0.0

python scipion-pyworkflow/pyworkflow/apps/pw_project.py TestEdBaseProtocols

Project details


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Files for scipion-ed, version 0.0.0
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