scipion-em-atomstructutils 1.0.7

A Scipion plugin to manipulate atomic structure files (PDB/MMCIF)

Atom_struct_utils scipion plugin

Utilities for handling PDB/mmcif atomic structure files:

Current plugin utilities:

• extract a chain from an atom structure (pdb/cif file)

• perform union of several atomic structures

implemented in a single protocol called operate

Install this plugin

You will need to use 2.0.0 version of Scipion to run these protocols. To install the plugin, you have two options:

• Stable version

scipion installp -p scipion-em-atom_struct_utils

OR

• through the plugin manager GUI by launching Scipion and following Configuration >> Plugins

• Developer’s version

1. Download repository:

git clone https://github.com/scipion-em/scipion-em-atom_struct_utils.git

2. Install:

scipion installp -p path_to_scipion-em-atom_struct_utils --devel

• Binary files

Atom_struct_utils plugin is a pure Python module, no binary files are required.

• Tests

To check the installation, simply run the following Scipion test:

• scipion test –grep TestOperate –run

• scipion test –grep TestConvertSymmetry –run

Examples

See Model Building Tutorial

Buildbot status

Status devel version:

Status production version: