Skip to main content

Plugin to use Cryoef program within the Scipion framework

Project description

This plugin provide a wrapper around cryoEF program.

build status

Installation

You will need to use 2.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:

  1. Stable version

scipion installp -p scipion-em-cryoef
  1. Developer’s version

    • download repository

    git clone https://github.com/scipion-em/scipion-em-cryoef.git
    • install

    scipion installp -p path_to_scipion-em-cryoef --devel

CryoEF binaries will be installed automatically with the plugin, but you can also link an existing installation. Default installation path assumed is software/em/cryoEF-1.1.0, if you want to change it, set CRYOEF_HOME in scipion.conf` file to the folder where the cryoEF is installed. To check the installation, simply run the following Scipion test:

scipion test cryoef.tests.test_protocols_cryoef.TestCryoEF

Supported versions

1.1.0

Protocols

  • orientation analysis

Detailed manual can be found in software/em/cryoEF-1.1.0/cryoEF_v1.1.0_manual.pdf

References

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

scipion-em-cryoef-1.0.5.tar.gz (24.1 kB view hashes)

Uploaded Source

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page