Plugin to use Locscale program within the Scipion framework
Project description
This plugin provide wrappers around LocScale program for local sharpening of cryo-EM density maps.
Installation
You will need to use 3.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version
scipion installp -p scipion-em-locscale
Developer’s version
download repository
git clone https://github.com/scipion-em/scipion-em-locscale.git
install
scipion installp -p path_to_scipion-em-locscale --devel
LocScale sources will be downloaded automatically with the plugin, but you can also link an existing installation. Default installation path assumed is software/em/locscale-0.1, if you want to change it, set LOCSCALE_HOME in scipion.conf file to the folder where the LocScale is installed. LocScale uses EMAN2 libraries, so you need to provide existing EMAN2 installation path by setting EMAN2_HOME variable (default eman-2.3) in the config file.
Note: mpi4py will be installed in the Eman’s python
To check the installation, simply run the following Scipion tests:
scipion test locscale.tests.test_protocol_locscale.TestProtLocscale
A complete list of tests can also be seen by executing scipion test --show --grep locscale
Supported versions
0.1
Protocols
local sharpening
References
Jakobi A. et al., eLife, 2017
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for scipion-em-locscale-3.0.4.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | fa2482d62db2d50c8d3811f61295abd0dbac992414186414082c938d768ac0f8 |
|
MD5 | 7144dc9f4ce80a2f5cdc74fa5812501f |
|
BLAKE2b-256 | 03ce19016d9f7a18536580d6fb83503d8ac21e7c16587eab5c5273cacf2037a5 |
Hashes for scipion_em_locscale-3.0.4-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | f8b2ec337104a0e605a73f3ff7dbe192898548ddb820260d2f230c1fa61e4444 |
|
MD5 | 8fadc15c3e6bc821676afec337a68e73 |
|
BLAKE2b-256 | 630cca4febff75347718dcdb74ebf9f323590f43565a7a1267aaf2b0f568221d |