scipion-em-pyseg

Scipion plugin pyseg.

Project description

Scipion - PySeg plugin

This plugin allows to use PySeg - De novo analysis for cryo-electron tomography - within the Scipion framework.

Setup

System pre-requisites:
1. Cmake 2.6.3+. The intallation command in Ubuntu is:
```
sudo apt-get install cmake
```
1. GSL (GNU Scientific Library). In Ubuntu, the installation command is:
```
sudo apt-get install libgsl-dev
```
1. gcc/g++ 5 (for DisPerSE compilation). In Ubuntu, the installation command is:
```
sudo apt -y install gcc-5 g++-5
```
Install this plugin in devel mode:

Using the command line:

scipion3 installp -p local/path/to/scipion-em-pyseg --devel

Installation can be checked out running some tests (Important: TestPosRec requires Scipion plugin for Dynamo to be installed:

scipion3 tests pyseg.tests.test_preseg_graphs_fils_picking.TestFromPresegToPicking

scipion3 tests pyseg.tests.test_pos_rec.TestPostRec

Contact information:

If you experiment any problem, please contact us here: scipion-users@lists.sourceforge.net or open an issue.

We’ll be pleased to help.

Scipion Team

Project details

Release history Release notifications | RSS feed

3.1.3

Jun 17, 2024

3.1.2

Nov 15, 2023

3.1.1

Jan 9, 2023

3.1.0

Jan 9, 2023

3.0.5

Jan 9, 2023

3.0.3

Sep 17, 2021

3.0.2

Sep 14, 2021

3.0.1

Jun 15, 2021

3.0.0

Jun 11, 2021

This version

3.0.0b0 pre-release

Mar 26, 2021

0.2

Jul 14, 2020

0.1

Jun 1, 2020

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