This plugin provides a wrapper for SIDESPLITTER program for mitigating local overfitting.
Installation
You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version
scipion installp -p scipion-em-sidesplitterDeveloper’s version
download repository
git clone -b devel https://github.com/scipion-em/scipion-em-sidesplitter.gitinstall
scipion installp -p /path/to/scipion-em-sidesplitter --devel
SIDESPLITTER sources will be installed automatically with the plugin, but you can also link an existing installation.
Default installation path assumed is software/em/sidesplitter-1.2, if you want to change it, set SIDESPLITTER_HOME in scipion.conf file pointing to the folder where the SIDESPLITTER is installed.
To check the installation, simply run one of the following Scipion tests:
scipion test sidesplitter.tests.test_protocol_sidesplitter.TestSideSplitterA complete list of tests can also be seen by executing scipion test --show --grep sidesplitter
Supported versions
1.2
Protocols
local filter
References
Kailash Ramlaul, Colin M. Palmer and Christopher H. S. Aylett (2020). Mitigating Local Over-fitting During Single Particle Reconstruction with SIDESPLITTER. https://www.biorxiv.org/content/10.1101/2019.12.12.874081v2
1 maintainer
Metadata
1 maintainer
Release files for scipion-em-sidesplitter 3.0.13
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| scipion_em_sidesplitter-3.0.13.tar.gz | 21.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| scipion_em_sidesplitter-3.0.13-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 47.3 kB
Release files / scipion_em_sidesplitter-3.0.13.tar.gz
| Download URL | scipion_em_sidesplitter-3.0.13.tar.gz |
|---|---|
| Size | 21.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.8.18
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Release files / scipion_em_sidesplitter-3.0.13-py3-none-any.whl
| Download URL | scipion_em_sidesplitter-3.0.13-py3-none-any.whl |
|---|---|
| Size | 26.3 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.8.18
|
