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Sphire ready to use in scipion.

Project description

# scipion-em-sphire
Plugin to use Sphire programs within the Scipion framework

So far we have implemented:

* crYOLO Version 1.2.2


1. Please follow installation instructions from [Sphire webpage]( in order to install:
- crYOLO (last tested version: 1.2.2)
- crYOLO's boxmanager (last tested version: 1.1.0).

2. If you want to use the generic model, please download also the General PhosaursNet model and

edit the `~/.config/scipion/scipion.conf` file in such a way that exists the following
CRYOLO_GEN_MODEL = path/to/the/downloaded/General_PhosaursNet_model

3. Install scipion-em-sphire as a Scipion plugin

- by running:
scipion installp -p scipion-em-sphire


- through the plugin manager GUI by launching Scipion and following *Configuration* >> *Plugins*

### For **developers** replace point 3 for

3a. Clone this repository in a local folder
git clone

3b. Install the Scipion plugin in a devel mode
scipion installp -p --devel /path/where/you/cloned/the/repo/in/the/previous/point

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Files for scipion-em-sphire, version 1.1.1
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