scipion-em-sphire

Sphire ready to use in scipion.

Project description

# scipion-em-sphire
Plugin to use Sphire programs within the Scipion framework

So far we have implemented:

* crYOLO Version 1.2.2

Installation
============

1. Please follow installation instructions at <http://sphire.mpg.de/wiki/doku.php?id=downloads:cryolo_1&redirect=1>

2. Install `crYOLO Version 1.2.2 <http://sphire.mpg.de/wiki/doku.php?id=cryolo_archive#cryolo>

3. Install `crYOLO boxmanager 1.1.0 <http://sphire.mpg.de/wiki/doku.php?id=cryolo_archive#cryolo>

4. If you want to use the generic model, please download the General PhosaursNet model and it the add the path in
~/.config/scipion/scipion.conf
CRYOLO_GEN_MODEL = path/to/the/downloaded/General_PhosaursNet_model

5. git clone the plugin repository to any local folder <https://github.com/scipion-em/>
git clone git@github.com:scipion-em/scipion-em-myplugin.git /home/me/myplugin

6. Install scipion-em-sphire
a) In user mode: or through the GUI menu bar
``scipion installp -p scipion-em-sphire``

OR

b, through the GUI menu bar. Please select Configuration/Plugins

7. Add the path to ~/.config/scipion/scipion.conf
CRYOLO_HOME = ~/anaconda3/envs/cryolo

Project details

Release history Release notifications | RSS feed

3.2.3

Nov 12, 2024

3.2.2

Jul 11, 2024

3.2.1

Jun 24, 2024

3.1.14

Feb 12, 2024

3.1.13

Jan 25, 2024

3.1.12

Dec 20, 2023

3.1.11

Dec 19, 2023

3.1.10

Jun 29, 2023

3.1.9

May 15, 2023

3.1.8

May 11, 2023

3.1.6

Mar 20, 2023

3.1.5

Mar 14, 2023

3.1.4

Mar 10, 2023

3.1.1

Jan 22, 2023

3.1

Jan 19, 2023

3.0.11

Dec 20, 2022

3.0.10

Sep 13, 2022

3.0.9

Feb 24, 2022

3.0.8

Feb 23, 2022

3.0.7

Aug 16, 2021

3.0.6

Dec 3, 2020

3.0.5

Nov 10, 2020

3.0.4

Aug 10, 2020

3.0.3

Jul 31, 2020

3.0.1

Jul 1, 2020

3.0.0

May 22, 2020

1.4.0

Apr 17, 2020

1.3.0

Nov 28, 2019

1.2.9

Oct 24, 2019

1.2.8

Jul 23, 2019

1.2.7

May 20, 2019

1.2.6b1 pre-release

Apr 1, 2019

1.2.6b0 pre-release

Apr 1, 2019

1.2.5

Apr 1, 2019

1.2.4

Apr 1, 2019

1.2.3

Apr 1, 2019

This version

1.2.2

Mar 8, 2019

1.1.1

Apr 1, 2019

1.1.0

Feb 20, 2019

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