Skip to main content

Sphire ready to use in scipion.

Project description

# scipion-em-sphire
Plugin to use Sphire programs within the Scipion framework

So far we have implemented:

* crYOLO Version 1.2.2

Installation
============

1. Please follow installation instructions from [Sphire webpage](http://sphire.mpg.de/wiki/doku.php?id=downloads:cryolo_1&redirect=1) in order to install:
- crYOLO (last tested version: 1.2.2)
- crYOLO's boxmanager (last tested version: 1.1.0).

2. If you want to use the generic model, please download also the General PhosaursNet model and

edit the `~/.config/scipion/scipion.conf` file in such a way that exists the following
```
CRYOLO_GEN_MODEL = path/to/the/downloaded/General_PhosaursNet_model
```

3. Install scipion-em-sphire as a Scipion plugin

- by running:
```
scipion installp -p scipion-em-sphire
```

OR

- through the plugin manager GUI by launching Scipion and following *Configuration* >> *Plugins*


### For **developers** replace point 3 for

3a. Clone this repository in a local folder
```
git clone https://github.com/scipion-em/scipion-em-sphire
```

3b. Install the Scipion plugin in a devel mode
```
scipion installp -p --devel /path/where/you/cloned/the/repo/in/the/previous/point
```

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
scipion-em-sphire-1.2.3.tar.gz (32.5 kB) Copy SHA256 hash SHA256 Source None

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page