scipion-em-sphire

Sphire ready to use in scipion.

Project description

Sphire scipion plugin

Plugin to use Sphire programs within the Scipion framework

So far we have implemented:

crYOLO Version 1.2.2

Setup

Please follow installation instructions from: http://sphire.mpg.de/wiki/doku.php?id=downloads:cryolo_1&redirect=1 in order to install:
- crYOLO (last tested version: 1.2.2)
- crYOLO’s boxmanager (last tested version: 1.1.0).
If you want to use the generic model, please download also the General PhosaursNet model and edit the ~/.config/scipion/scipion.conf file in such a way that exists the following

CRYOLO_GEN_MODEL = path/to/the/downloaded/General_PhosaursNet_model

Install scipion-em-sphire as a Scipion plugin

scipion installp -p scipion-em-sphire

through the plugin manager GUI by launching Scipion and following Configuration >> Plugins

Alternatively, in devel mode:

scipion installp -p local/path/to/scipion-em-sphire --devel

Project details

Release history Release notifications | RSS feed

3.2.3

Nov 12, 2024

3.2.2

Jul 11, 2024

3.2.1

Jun 24, 2024

3.1.14

Feb 12, 2024

3.1.13

Jan 25, 2024

3.1.12

Dec 20, 2023

3.1.11

Dec 19, 2023

3.1.10

Jun 29, 2023

3.1.9

May 15, 2023

3.1.8

May 11, 2023

3.1.6

Mar 20, 2023

3.1.5

Mar 14, 2023

3.1.4

Mar 10, 2023

3.1.1

Jan 22, 2023

3.1

Jan 19, 2023

3.0.11

Dec 20, 2022

3.0.10

Sep 13, 2022

3.0.9

Feb 24, 2022

3.0.8

Feb 23, 2022

3.0.7

Aug 16, 2021

3.0.6

Dec 3, 2020

3.0.5

Nov 10, 2020

3.0.4

Aug 10, 2020

3.0.3

Jul 31, 2020

3.0.1

Jul 1, 2020

3.0.0

May 22, 2020

1.4.0

Apr 17, 2020

1.3.0

Nov 28, 2019

1.2.9

Oct 24, 2019

1.2.8

Jul 23, 2019

1.2.7

May 20, 2019

This version

1.2.6b1 pre-release

Apr 1, 2019

1.2.6b0 pre-release

Apr 1, 2019

1.2.5

Apr 1, 2019

1.2.4

Apr 1, 2019

1.2.3

Apr 1, 2019

1.2.2

Mar 8, 2019

1.1.1

Apr 1, 2019

1.1.0

Feb 20, 2019

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Source Distribution

scipion-em-sphire-1.2.6b1.tar.gz (32.5 kB view details)

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