scipion-em-spoc 1.0.0

Plugin to use SPOC programs within the Scipion framework

This plugin provide wrappers around several programs of SPOC tomography software suite.

stable:

devel: |

Installation

You will need to use 3.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:

1. Stable version (not avalaible yet)

scipion installp -p scipion-em-spoc

2. Developer’s version

   • download repository

   git clone https://github.com/scipion-em/scipion-em-spoc.git

   • install

   scipion installp -p path_to_scipion-em-spoc --devel

SPOC binaries will be installed automatically with the plugin.

• Default installation path assumed is software/em/spoc-1.0, if you want to change it, set SPOC_HOME in scipion.conf file pointing to the folder where the SPOC is installed.

To check the installation, simply run one of the following Scipion tests:

scipion3 tests spoc.tests.test_protocols_spoc.TestFscFdrControl

A complete list of tests can also be seen by executing scipion test --show --grep emantomo

Supported versions

• 1.0

Protocols

• FSC_FDR Control

References

1. Beckers, M., Jakobi, A. J., Sachse, C. (2019) Thresholding of cryo-EM density maps by false discovery rate control. IUCr Journal 6 (1)