Plugin to use SPOC programs within the Scipion framework
Project description
This plugin provide wrappers around several programs of SPOC.
stable: |
devel: | |
Installation
You will need to use 3.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version (not avalaible yet)
scipion installp -p scipion-em-spoc
Developer’s version
download repository
git clone https://github.com/scipion-em/scipion-em-spoc.git
install
scipion installp -p path_to_scipion-em-spoc --devel
SPOC binaries will be installed automatically with the plugin.
Default installation path assumed is software/em/spoc-1.0, if you want to change it, set SPOC_HOME in scipion.conf file pointing to the folder where the SPOC is installed.
To check the installation, simply run one of the following Scipion tests:
scipion3 tests spoc.tests.test_protocols_spoc.TestFscFdrControl
A complete list of tests can also be seen by executing scipion test --show --grep emantomo
Supported versions
1.0
Protocols
FSC_FDR Control
References
Beckers, M., Jakobi, A. J., Sachse, C. (2019) Thresholding of cryo-EM density maps by false discovery rate control. IUCr Journal 6 (1)
Project details
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