This plugin provides a wrapper for some of the programs of the Warp software.
Installation
You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version
scipion installp -p scipion-em-warpDeveloper’s version
download repository
git clone -b devel https://github.com/scipion-em/scipion-em-warp.gitinstall
scipion installp -p /path/to/scipion-em-warp --devel
Verifying
To check the installation, simply run one of the following Scipion tests:
scipion3 tests warp.tests.protocols_tomo_tests.TestWarpEstimateCTFTomoReconstruction
scipion3 tests warp.tests.protocols_tomo_tests.TestDeconvolveTomo
scipion3 tests warp.tests.test_protocols.TestWarpMotionCorrection
scipion3 tests warp.tests.test_protocols.TestDeconvolveMics
Protocols
deconvolve micrographs
deconvolve tomograms
deconvolve tilt-series
tomo reconstruction
motion correction (for SPA)
tilt-series motion and ctf estimation (includes ctf estimation and defocus handedness)
References
Dimitry Tegunov and Patrick Cramer. Real-time cryo-electron microscopy data preprocessing with Warp. Nature Methods 16(11), 2019, p. 1146-1152.
1 maintainer
Metadata
1 maintainer
Release files for scipion-em-warp 3.6.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| scipion_em_warp-3.6.2.tar.gz | 76.5 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| scipion_em_warp-3.6.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 171.8 kB
Release files / scipion_em_warp-3.6.2.tar.gz
| Download URL | scipion_em_warp-3.6.2.tar.gz |
|---|---|
| Size | 76.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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No |
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twine/6.1.0 CPython/3.8.18
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Release files / scipion_em_warp-3.6.2-py3-none-any.whl
| Download URL | scipion_em_warp-3.6.2-py3-none-any.whl |
|---|---|
| Size | 95.3 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.8.18
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