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Plugin to use Warp within the Scipion framework

Project description

This plugin provides a wrapper for some of the programs of the Warp software.

PyPI release License Supported Python versions SonarCloud quality gate Downloads


You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:

  1. Stable version

scipion installp -p scipion-em-warp
  1. Developer’s version

    • download repository

    git clone -b devel
    • install

    scipion installp -p /path/to/scipion-em-warp --devel


To check the installation, simply run one of the following Scipion tests:

  • scipion3 tests warp.tests.test_protocols.TestDeconvolveMics

  • scipion3 tests warp.tests.test_protocols_tomo.TestDeconvolveTomo


  • deconvolve micrographs

  • deconvolve tomograms

  • deconvolve tilt-series


  1. Dimitry Tegunov and Patrick Cramer. Real-time cryo-electron microscopy data preprocessing with Warp. Nature Methods 16(11), 2019, p. 1146-1152.

Project details

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scipion-em-warp-3.2.3.tar.gz (42.9 kB view hashes)

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scipion_em_warp-3.2.3-py3-none-any.whl (50.0 kB view hashes)

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