Plugin to use Warp within the Scipion framework
Project description
This plugin provides a wrapper for some of the programs of the Warp software.
Installation
You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version
scipion installp -p scipion-em-warp
Developer’s version
download repository
git clone -b devel https://github.com/scipion-em/scipion-em-warp.git
install
scipion installp -p /path/to/scipion-em-warp --devel
Verifying
To check the installation, simply run one of the following Scipion tests:
scipion3 tests warp.tests.test_protocols.TestDeconvolveMics
scipion3 tests warp.tests.test_protocols_tomo.TestDeconvolveTomo
Protocols
deconvolve micrographs
deconvolve tomograms
deconvolve tilt-series
References
Dimitry Tegunov and Patrick Cramer. Real-time cryo-electron microscopy data preprocessing with Warp. Nature Methods 16(11), 2019, p. 1146-1152.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for scipion_em_warp-3.2.2-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 331fadecf29756ea2d651bde0c17abdb19b4879fe649cb03e61983174ba2902d |
|
MD5 | 945bf5a85d24a46eb14c2a8af6ee115d |
|
BLAKE2b-256 | 84fff84bbe12201a2508ddda22a12281f0798706722ac384fc797b0e40a167b6 |