Plugin to use Warp within the Scipion framework
Project description
This plugin provides a wrapper for some of the programs of the Warp software.
Installation
You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version
scipion installp -p scipion-em-warpDeveloper’s version
download repository
git clone -b devel https://github.com/scipion-em/scipion-em-warp.gitinstall
scipion installp -p /path/to/scipion-em-warp --devel
Verifying
To check the installation, simply run one of the following Scipion tests:
scipion tests warp.tests.test_protocols.TestDeconvolve2D
scipion tests warp.tests.test_protocols_tomo.TestDeconvolve3D
Protocols
deconvolution 2D
deconvolution 3D
References
Dimitry Tegunov and Patrick Cramer. Real-time cryo-electron microscopy data preprocessing with Warp. Nature Methods 16(11), 2019, p. 1146-1152.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file scipion-em-warp-3.2.tar.gz.
File metadata
- Download URL: scipion-em-warp-3.2.tar.gz
- Upload date:
- Size: 42.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.8.18
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | d2063e78fd9da51d3cfc97add21307df04ebff2a449b5b5f6e77fa8eccfb738e |
|
| MD5 | b08a88dddb883fc2ac459c3f59f62d28 |
|
| BLAKE2b-256 | a2606da4f4732ac393e22186272ca6d9cd94f47d00e7c5741ee23836ed196330 |
File details
Details for the file scipion_em_warp-3.2-py3-none-any.whl.
File metadata
- Download URL: scipion_em_warp-3.2-py3-none-any.whl
- Upload date:
- Size: 49.4 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.8.18
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | b7f4a6bdde80d66212cee7b9308673bdb1db15154fd1ad7ba042ecbc61798e25 |
|
| MD5 | 3b81ad37f9445a3fa9915d380a243760 |
|
| BLAKE2b-256 | e09e4fc4e18860ade8c3582ea529c57b8f4c84108c46818a122b78ea989c7e43 |
