scipion-installer 0a0

Installs scipion 3 creating a virtual environment fot it

pwem is a Python module of Scipion framework for image processing in Electron Microscopy

The entire collection is licensed under the terms of the GNU Public License, version 3 (GPLv3).

Development

To install pwem for development purposes, one can do:

# Create a clean virtual environment
python -m venv ~/myenv
source ~/myenv/bin/activate
git clone [e-mail]:scipion-em/scipion-em.git
cd scipion-em
python -m pip install -e .  # Install in the environment as development

Running tests

First make sure that pwem is available as a Python module in your current Python environment. During development, I tend to set the PYTHONPATH:

cd scipion-em
# Either you have installed as mentioned above, or modify the PYTHONPATH
export PYTHONPATH=$PYTHONPATH:$PWD
# After pyworkflow is accesible as a module, then:
cd pwem/tests

python -m unittest discover