pyworkflow
pyworkflow is a simple workflow platform used in scientific applications. It has been initially developed within the Scipion framework for image processing in Electron Microscopy.
pyworkflow allows you to define a working Domain by defining the following group of classes:
Objects: input/outputs that will be generated by different programs
Protocols: special type of Objects that have defined input parameters and will produce some output
Viewers: Entities that provide graphical analysis of results.
Wizards: Small GUIs that can be develop to help users to select given parameter values.
Development
To install pyworkflow for development purposes, one can do:
# Create a clean virtual environment
conda create -n scipion python=3.8
conda activate
git clone https://github.com/scipion-em/scipion-pyworkflow.git
cd scipion-pyworkflow
pip install -e .Running tests
conda activate scipion
cd scipion-pyworkflow
export SCIPION_DOMAIN="pyworkflowtests/tests/mock_domain"
python -m unittest discover
# Simple project GUI can be shown after running tests:
python pyworkflow/apps/pw_project.py TestProtocolOutputsAll test projects are located in ~/ScipionUserData/Tests/
API documentation
https://scipion-em.github.io/docs/release-3.0.0/api/pyworkflow/pyworkflow.html
2 maintainers
Metadata
2 maintainers
Release files for scipion-pyworkflow 3.11.7
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| scipion_pyworkflow-3.11.7.tar.gz | 1.1 MB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| scipion_pyworkflow-3.11.7-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 2.2 MB
Release files / scipion_pyworkflow-3.11.7.tar.gz
| Download URL | scipion_pyworkflow-3.11.7.tar.gz |
|---|---|
| Size | 1.1 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
c08e08fef1f05e20be029d2be2e08221b2cbc3ceb233da047d507a34ea480231
|
|
BLAKE2b-256 checksum How to use checksums |
ed444ceeb4aa222502614b146ce5dc88f803b0d37c18da70a236d3089bbc7d0e
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.12.13
|
Release files / scipion_pyworkflow-3.11.7-py3-none-any.whl
| Download URL | scipion_pyworkflow-3.11.7-py3-none-any.whl |
|---|---|
| Size | 1.2 MB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
3b39a7628cedea0982e9b270634f2c84b69e1da1d5a7605fe9bdc1e769304c85
|
|
BLAKE2b-256 checksum How to use checksums |
904a4b45be6a11ab5ab1a25625f77f508d23910136b0a936bfdd05b3e6110cc9
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.12.13
|
Security for scipion-pyworkflow 3.11.7
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
