Simple workflow platform used in scientific applications, initially developed within the Scipion framework for image processing in Electron Microscopy.
Project description
pyworkflow is a simple workflow platform used in scientific applications. It has been initially developed within the Scipion framework for image processing in Electron Microscopy.
pyworkflow allows you to define a working Domain by defining the following group of classes:
Objects: input/outputs that will be generated by different programs
Protocols: special type of Objects that have defined input parameters and will produce some output
Viewers: Entities that provide graphical analysis of results.
Wizards: Small GUIs that can be develop to help users to select given parameter values.
Development
To install pyworkflow for development purposes, one can do:
# Create a clean virtual environment
python -m virtualenv ~/myenv
source ~/myenv/bin/activate
git clone git@github.com:scipion-em/scipion-pyworkflow.git
cd scipion-pyworkflow
python -m pip install -e . # Install in the environment as developmentRunning tests
First make sure that pyworkflow is available as a Python module in your current Python environment. During development, I tend to set the PYTHONPATH:
cd scipion-pyworkflow
export PYTHONPATH=$PYTHONPATH:$PWD
cd pyworkflow/tests
python -m unittest discoverRelease history Release notifications | RSS feed
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Source Distribution
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