scmags 1.7

Single Cell Marker Gene Selection Tool For Spatial Trancriptomics

scMAGS: Marker Gene Selection From scRNA-seq Data for Spatial Transcriptomics Studies

• scmags selects marker genes from scRNA-seq data that are exclusive to each cell type such that, selected marker genes are highly expressed in a specific cell type while lowly expressed in other cell types.

• See the article for more detailed information.

Installation

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• scmags can be installed as follows:

$ pip install scmags

• Also the development verison of scmags can be installed from master branch of Git repository:

$ pip install git+https://github.com/doganlab/scmags

• See the tutorial for more detailed information.

Citation

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Please cite the following publication if you find scmags beneficial in your study:

Baran, Y., & Doğan, B. scMAGS: Marker gene selection from scRNA-seq data for spatial transcriptomics studies. Computers In Biology and Medicine (2023): 106634. https://doi.org/10.1016/j.compbiomed.2023.106634