Approximate any single cell data set, saving >99% of memory and runtime.
Project description
scquill
Approximate any single cell data set, saving >99% of memory and runtime.
Approximating a single cell data set
import scquill
q = Quill(
filename='myscdata.h5ad',
output_filename='myapprox.h5',
celltype_column="cell_annotation",
)
q()
Steps:
- Load dataset if necessary
- Preprocess
- Compress
- Store to output file
- (TODO): Provide an interface to explore approximations.
Authors
Fabio Zanini @fabilab
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