scrnatools 1.12.3

Tools for single cell RNA sequencing pipelines

scrnatools provides helper plotting and analysis functions built on top of the scanpy and scVI packages to perform common tasks in scRNA-seq analysis pipelines. Extensive description of general best practices and detailed default pipeline examples can be found in the scanpy and scvi-tools documentation. For an example walkthrough of a typical scRNA-seq pipeline and the added functionality provided by scrnatools see the jupyter notebooks provided at https://github.com/j-germino/scrnatools-git/tree/main/examples. These can be uploaded to Google drive and run within a Google colab environemnt, using a GPU session. API documentation is available at: https://scrnatools-git.readthedocs.io/en/latest/.