scrnatools provides helper plotting and analysis functions built on top of the scanpy and scVI packages to perform common tasks in scRNA-seq analysis pipelines. Extensive description of general best practices and detailed default pipeline examples can be found in the scanpy and scvi-tools documentation. For an example walkthrough of a typical scRNA-seq pipeline and the added functionality provided by scrnatools see the jupyter notebooks provided at https://github.com/j-germino/scrnatools-git/tree/main/examples. These can be uploaded to Google drive and run within a Google colab environemnt, using a GPU session. API documentation is available at: https://scrnatools-git.readthedocs.io/en/latest/.
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Release files for scrnatools 1.12.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
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| scrnatools-1.12.3.tar.gz | 20.9 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| scrnatools-1.12.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 54.5 kB
Release files / scrnatools-1.12.3.tar.gz
| Download URL | scrnatools-1.12.3.tar.gz |
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| Size | 20.9 kB |
| Tags | Source |
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Release files / scrnatools-1.12.3-py3-none-any.whl
| Download URL | scrnatools-1.12.3-py3-none-any.whl |
|---|---|
| Size | 33.7 kB |
| Tags | Python 3 |
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