A library to handle secondary metabolite annotations
Project description
This library is intended to make dealing with secondary metabolite
annotations
as provided by databases like
MIBiG or tools like
antiSMASH easier from
within python programs.
At the moment, it just supports the GenBank file format used by
MIBiG
and antiSMASH, not
the MIBiG JSON format. Support for this is
planned.
Installing
SecMet is a normal Python module, so you can install it from a local
repository
checkout using python setup.py install, or from PyPi using
pip install secmet.
Note that secmet is still in early development, and not fit for production use.
Packaging
Because I perfer to work with markdown and Python forces me to use
reStructuredText, a Makefile helps in order to create a new PyPi
release. The
pandoc utility is required. Run the Makefile using
make release to create a
new secmet library sdist.
License
Copyright 2015 Kai Blin <kblin@biosustain.dtu.dk>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
