[](https://travis-ci.org/mjirik/sed3)
[](https://coveralls.io/r/mjirik/sed3)
[](http://badge.fury.io/py/sed3)
sed3
====
3D viewer and seed editor
Example 1 - get seeds
=======
import sed3
import numpy as np
img = np.random.random([10, 12, 15])
img[6:9, 2:7, 1:5] += 2
img[7:9, 3:9, 8:14] += 3
ed = sed3.sed3(img)
ed.show()
print ed.seeds
Example 2 - static figure
=======
import sed3
import numpy as np
img = np.random.random([10, 12, 15])
img[6:9, 2:7, 1:5] += 2
img[7:9, 3:9, 8:14] += 3
sed3.show_slices(img)
Example 3 - more options
=======
import sed3
import numpy as np
img = np.random.random([10, 12, 15])
img[6:9, 2:7, 1:5] += 2
img[7:9, 3:9, 8:14] += 3
seeds = np.zeros(img.shape)
seeds[6:8, 4, 3:10] = 1
seeds[6:8, 6:11, 9:11] = 2
ed = sed3.sed3(img, seeds=seeds)
contour = np.zeros(img.shape)
contour[6:8, 3:10, 2:10] = 1
contour[6:8, 5:8, 4:7] = 2
ed = sed3.sed3(img, seeds=seeds, contour=contour, windowW=3.5, windowC=1.5)
seeds = ed.show()
Example 4 - PyQt version
=======
import sed3qt
import numpy as np
from PyQt4.QtGui import QApplication
img = np.random.random([10, 12, 15])
img[6:9, 2:7, 1:5] += 2
img[7:9, 3:9, 8:14] += 3
app = QApplication([])
ed = sed3.sed3qt(img)
ed.exec_()
print ed.seeds
Install notes
=============
sudo apt-get install python-matplotlib
pip install sed3
[](https://coveralls.io/r/mjirik/sed3)
[](http://badge.fury.io/py/sed3)
sed3
====
3D viewer and seed editor
Example 1 - get seeds
=======
import sed3
import numpy as np
img = np.random.random([10, 12, 15])
img[6:9, 2:7, 1:5] += 2
img[7:9, 3:9, 8:14] += 3
ed = sed3.sed3(img)
ed.show()
print ed.seeds
Example 2 - static figure
=======
import sed3
import numpy as np
img = np.random.random([10, 12, 15])
img[6:9, 2:7, 1:5] += 2
img[7:9, 3:9, 8:14] += 3
sed3.show_slices(img)
Example 3 - more options
=======
import sed3
import numpy as np
img = np.random.random([10, 12, 15])
img[6:9, 2:7, 1:5] += 2
img[7:9, 3:9, 8:14] += 3
seeds = np.zeros(img.shape)
seeds[6:8, 4, 3:10] = 1
seeds[6:8, 6:11, 9:11] = 2
ed = sed3.sed3(img, seeds=seeds)
contour = np.zeros(img.shape)
contour[6:8, 3:10, 2:10] = 1
contour[6:8, 5:8, 4:7] = 2
ed = sed3.sed3(img, seeds=seeds, contour=contour, windowW=3.5, windowC=1.5)
seeds = ed.show()
Example 4 - PyQt version
=======
import sed3qt
import numpy as np
from PyQt4.QtGui import QApplication
img = np.random.random([10, 12, 15])
img[6:9, 2:7, 1:5] += 2
img[7:9, 3:9, 8:14] += 3
app = QApplication([])
ed = sed3.sed3qt(img)
ed.exec_()
print ed.seeds
Install notes
=============
sudo apt-get install python-matplotlib
pip install sed3
1 maintainer
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