3D Segment ascidian embryos using cellpose. The images are first rescaled to be isotropic and then downscaled, before cellpose is used. The resulting labels are upscaled to match the original data.
Project description
segment-embryo
3D Segment ascidian embryos using cellpose. The images are first rescaled to be isotropic and then downscaled, before cellpose is used. The resulting labels are upscaled to match the original data.
This napari plugin was generated with copier using the napari-plugin-template.
Installation
You can install segment-embryo via pip:
pip install segment-embryo
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the MIT license, "segment-embryo" is free and open source software
Issues
If you encounter any problems, please [file an issue] along with a detailed description.
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