senaite.health 1.2.3

SENAITE Health

SENAITE LIMS extension for Health care labs

Introduction

SENAITE.HEALTH is an extension for SENAITE.LIMS to make it suitable for Health Care Laboratories, with additional capabilities for the management of patients, doctors, clinical cases, symptoms, and a lot more.

Installation

Please follow the installation instructions for SENAITE LIMS first.

After SENAITE LIMS is installed, stop the instance and add senaite.health into the eggs list inside the [buildout] section of your buildout.cfg:

[buildout]
eggs =
    Plone
    Pillow
    senaite.lims
    senaite.health

For the changes to take effect you need to re-run buildout from your console:

$ bin/buildout

Start the instance and login as admin user. Go to Site Setup > Add-ons, select “SENAITE HEALTH” and press Install.

Screenshots

Dashboard

Analyses

Patients

Cases

Aetiologic Agents

Contribute

We want contributing to SENAITE.HEALTH to be fun, enjoyable, and educational for anyone, and everyone. This project adheres to the Contributor Covenant.

By participating, you are expected to uphold this code. Please report unacceptable behavior.

Contributions go far beyond pull requests and commits. Although we love giving you the opportunity to put your stamp on SENAITE.HEALTH, we also are thrilled to receive a variety of other contributions.

Please, read Contributing to senaite.health document.

If you wish to contribute with translations, check the project site on Transifex.

Feedback and support

• Community site

• Gitter channel

• Users list

License

SENAITE.HEALTH Copyright (C) 2018-2020 RIDING BYTES & NARALABS

This software, henceforth “SENAITE.HEALTH” is an add-on for Plone CMS and is a derivative work of BIKA HEALTH.

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License version 2 as published by the Free Software Foundation.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

Changelog

1.2.3 (2020-04-09)

Added

• #161 Compatibility with senaite.panic add-on

• #166 Better handling of ClientPatientID and Patient fields in Add Sample

Changed

• #163 Cannot override behavior of Patients folder when using before_render

• #157 Changed Base Catalog Tool

Removed

• #170 Removal of stale javascripts and css

Fixed

• #180 Fix Patient listings show wrong age

• #181 Patient historic results are not displayed

• #172 Fix sporadical errors when contacts do not have a valid email address

• #168 Cannot create Patient inside Client (content type not allowed)

• #162 Unable to search by Client Patient ID in Sample Add form

• #159 Ensure Client contents allow to hold Patient types

• #158 Fix the filter query in the Add Sample Form

1.2.2 (2019-11-07)

Added

• #151 Additional buttons in Batch and Patient add/edit views

• #134 ReferenceWidget for client searches in Add Patient form

• #130 Allow to deactivate/activate Doctors

Changed

• #152 Move Patient inside Client folder when client assigned

• #149 Removed javascripts from Add Sample form. Use field adapters instead

• #144 Additional identifiers for Patients ported to senaite.health

Removed

• #150 Removed Add button next to Patient and Doctor fields from Add Sample form

• #148 Removed getClientID, getClientUID, getClientTitle indexers for Batch

Fixed

• #143 AttributeError on Patient creation after add-on initially installed

• #124 Error trying to Edit Analysis Specifications

• #147 Reindex content structure after install to fix missing icons

• #146 Move skin layer after the custom layer

• #142 Client contacts cannot add cases

• #141 Unable to Deactivate Doctors

• #137 Client reference widget does not work in Add Patient overlay

• #133 System clearing patient first name on editing patient

• #132 Auto-fill Batch field in Sample Add form when Batch defined in request

• #131 Auto-fill ClientPatientID field in Sample Add form when Patient defined

1.2.1 (2019-07-01)

Changed

• #129 Autofill fields from Add Sample depending on the context

• #120 Remove BatchSearchableText indexer

• #119 Faster Reference Widget searches

Fixed

• #125 Fix permissions due to global permission changes in core

• #123 Filtering patient listing is slow

1.2.0 (2019-04-09)

Added

• #111 Transifex integration

Changed

• #118 Make senaite.health to depend on senaite.lims (instead of senaite.core)

• #116 Compatibility with senaite.core 1.3

• #110 Added health-specific layer

Removed

• #120 Removed IBatchSearchableText indexer (senaite.core#1346)

• #110 Removed z3c.unconfigure dependency

• #110 Removed taskqueue.collective dependency

Fixed

• #112 Insufficient privileges when “AR add” is clicked inside Patient

1.1.3 (2018-10-10)

Added

• #102 Add Primary Referrer column in Doctor listings

• #85 Allow client contact to list/add/edit Cases from its own Client

• #83 Allow client contact to create and edit Doctors

Changed

• #85 New icon set

Fixed

• #108 Autodetect suitable client in Doctor’s edit view

• #109 Traceback bika_widgets/remarks does not exist for

• #107 DateTime validator fires even if DateOfBirth is non-mandatory

• #106 Fields from Patient’s additional tabs are not displayed

• #105 Date of Birth and Age are required fields for anonymous patients

• #102 Doctors assigned to other clients are listed when logged as Client

• #103 All Samples are listed inside Case context

• #99 Traceback when publishing health results from inside a client

• #97 Traceback accessing Doctor samples when user is not Manager, LabManager or LabClerk

• #82 Inconsistent behavior with health’ skins priority over core’s

• #81 Traceback when importing diseases with setupdata.xlsx

1.1.2 (2018-05-05)

Added

• #74 Delay and minLength=2 in Patient’s reference widgets

Changed

• #70 Index and Metadata optimizations for AR Listing View

Removed

• #77 Remove Dry Matter references

Fixed

• #75 Patient & Doctor URL values in AR Listing Catalog contain ‘host’ info.

• #72 Slow searches in patients list

• #71 Slow Reference Widgets in ‘Add Case’ View

• #73 Slow Reference Widgets in ‘Add AR’ View

• #69 Add proper license to repository

1.1.1 (2018-04-07)

Added

• #56 Option for making Client Patient IDs unique

• #63 Display Doctor column in Analysis Requests listings

Changed

• #48 After Patient creation, redirect to Patient’s Analysis Requests view

Fixed

• #64 Samples not filtered in Doctor’s samples view

• #52 Date Reported is missing in reports

• #52 Date Collected is missing in reports

• #45 ConfigurationConflictError in “The workflow actions menu”

• #49 Default publication preference for Patients in Clients vocabulary error

• #44 Traceback on “copy to new” Analysis Request

1.1.0 (2018-01-26)

Changed

• #33 #37 bika.lims to senaite.core distribution

• #39 Improved performance for Patient listings

Fixed

• #39 Traceback on Patients when current user has Client role but is LabContact

• #36 Using parameter “vocabulary” wasn’t working in bika_setup

• #35 Analysis Request View error when the page redirects the user

• #44 Traceback on “copy to new” Analysis Request

1.0.0 (2017-11-10)

Added

• #30 Allow Client contacts to create patients

• #28 Asynchronous creation of Analysis Requests

• #18 Wildcards on searching in Patients lists

• #13 Added ‘meta_type’ column in Patient catalog

• #7 New Analysis Request Add form outside client and patient

Changed

• #27 Remove health’s bika_analysis_workflow.csv and use bika.lims’ one instead

• #21 Replacement of FileField by BlobField

• #20 SearchableText index moved to the base dictionary in LIMS

• #15 Base catalog template definition for indexes and metadata

• #9 Worksheet performance improvements

• #6 Added specific catalog for Analysis object types

• #4 Migration of filter bar definition for ARs and samples, from health to lims

• #2 Added specific catalog for Analysis Request object types

Fixed

• #32 Can’t search using Client Patient ID in patient listing

• #31 Can’t search using Client Patient ID in batches listing

• #29 AttributeError: ‘module’ object has no attribute ‘ViewPatients’

• #26 CatalogError: unknown sort_on index (Patient)

• #25 AttributeError on publish: ‘NoneType’ object has no attribute ‘bika_setup’

• #24 CatalogError in Patients folder view: unknown sort_on index (Title)

• #23 UnboundLocalError in Samples view: local variable ‘ar’ referenced before assignment

• #22 Worksheets not displaying analyses

• #19 Batch View. CatalogError: Unknown sort_on index (BatchID)

• #17 Unable to create specifications with min/max panic levels

• #16 ValueError while saving a clinical case: ‘BatchID’ is not in list

• #14 Analysis Request Submit (AJAX call). KeyError: ‘state’

• #12 CatalogError: Unknown sort_on index (created) in view.get_sections() from dashboard

• #11 Error on install: unexpected keyword argument ‘catalog_extensions’

• #11 Error on install: Can’t pickle BikaPatientCatalog

• #10 Sort on Patient not working in lists (Analysis Requests, Samples and Patients)

• #3 Bug during getPatientInfo from AR add view

3.2.0.1503-e5a0358 (2016-03-18)

• Updated to work with BikaLIMS 3.2

• HEALTH-503: Validation of Date of birth

• HEALTH-497: Hide Doctor field on EID Case Form

• HEALTH-357: UI. Post Patient Create landing page

• HEALTH-361: VL Cases

• HEALTH-413: Dashboard not showing

• HEALTH-402: In Analysis Request Add form, contact doesn’t get selected

3.1.8 (2015-11-03)

• HEALTH-301: Use newer version of Health flow diagram in next release

• HEALTH-281: Error in Bika Setup › Insurance Companies > Invoices

• HEALTH-305: Having invoices

• HEALTH-370: Worksheet architecture has changed in LIMS

• HEALTH-269: Analysis Request Add compatibility with LIMS 3.1.9

• HEALTH-273: Error upgrading to 317

• HEALTH-270: Error while importing patient with “yearinprefix” disabled

• HEALTH-271: Analysis request invoice view broken

• HEALTH-266: View error on invoice from analysis request

• HEALTH-258: Add “File attachment” on Patient

3.1.7 (2015-06-09)

• HEALTH-282: Error loading Add Analysis request

• HEALTH-245: Set-up data load. Patient ID conversion, alternatives

• HEALTH-227: Converting Patient IDs before import

• HEALTH-228: Load Setup data bugs

• HEALTH-140: AR Create per path lab standard form

• HEALTH-251: Add guarantor details in insurance companies

3.1.6 (2015-02-27)

• HEALTH-223: When you are adding a doctor through an overlay (add doctor button in cases), the address widgets don’t work properly.

• HEALTH-215: Correct Navigation tree order

• HEALTH-191: Client Contact permissions

• HEALTH-137: Medical Insurance for Patients. Alternative invoice workflow

• HEALTH-204: Doctor Samples view broken

• HEALTH-200: Additional picklists don’t work when creating Patients directly from the Case’s view

• HEALTH-136: [+ Add] Patient button on AR Create form.

• HEALTH-179: “Copy to new” button in AR, doesn’t copy the selected data.

• HEALTH-197: Health’s results report error.

• HEALTH-204: Batch.samples error loading page

• HEALTH-177: Past Medical History and Drug History’s end date selection error.

• HEALTH-178: Past Medical History, Travell History and Immunization History data: Impossible to remove the last set of data.

• HEALTH-208: Incompatibilty with new Bika LIMS’ add site templates

• HEALTH-197: Health’s results report error

• HEALTH-189: Patient Edit page: After define a country, it is not saved.

• HEALTH-184: Add Case: Patient Age at Case Onset Date doesn’t get filled after introduce the Onset Date.

3.1.5 (2014-10-10)

• HEALTH-176: Cannot choose a drug from the dropdown list on Patient->allergies

• HEALTH-174: Unable to add an AR to a Case (missing Client)

• HEALTH-163: Cannot be chosen Immunisation items from dropdown list.

• HEALTH-162: Cannot choose Drug Prohibition Explanation

• HEALTH-169: Analyst can’t see Samples site, Admin can.

• HEALTH-168: Diagnosis ICD widget does not complete from Code, Description

• HEALTH-161: In Add Patient, after introducing the Birth Date, the patient’s age don’t get filled automatically.

• HEALTH-157: Patient field is missing in AR add views

• HEALTH-150: Compatibility with the new JS loader machinery

• HEALTH-164: Editing a patient, location not have to be important on Travel History field

• HEALTH-166: “Patient Age at Case Onset Date” in Add Case cannot be filled

• HEALTH-172: Anything is displayed on drugs list

• HEALTH-173: ImmunizationHistory cannot save data

• HEALTH-149: Compatibility with the new Bika LIMS reporting subsystem

• HEALTH-152: Upgrade the test data worksheet

• HEALTH-145: Health icons not used. And 1 more

• HEALTH-152: Upgrade the test data worksheet

• Plus Bika-LIMS 3.1.5: http://git.io/ogjDuQ

3.1.2.1 (2014-08-05)

• HEALTH-144: Set up data: Identifier Types NameError: global name ‘_id’ is not defined

• HEALTH-143: Can not create site

3.1.2 (2014-07-25)

• HEALTH-104: Health Setup data failures

• HEALTH-28: Health load setup data. Drugs and Treatments did not import

• HEALTH-105: Case syndromic classifications site eror in setup

• HEALTH-93: AR. Updating Info portion

• HEALTH-27: AR Create. Copying Patient fields across does not autocomplete corresponding Name or ID

• Plus Bika-LIMS 3.1.2 and 3.1.3: http://git.io/MWb4dQ

3.1.1 (2014-07-11)

• HEALTH-122: Client contact cannot open Client page/AR page blank

• HEALTH-92: Display Patients tab inside Referral Institution (Client)

• HEALTH-109: Manually adding symptoms saving but remaining on the same page

• HEALTH-124: Client contact can access doctors and patients of other clients

• HEALTH-121: Client contact gets Insufficient Privileges upon login

• HEALTH-133: Case creation: Basal body temperature fields accepting values way out of range

• HEALTH-106: Mimetype text/plain is not allowed in Drug edit view

• HEALTH-73: Current and Historic results in PDF sorted in the same order

• HEALTH-61: Sort Symptoms table on gender

• HEALTH-23: No drugs listed in Drugs folder

• Hyperlinks to Analysis Requests in Patient’s Historic Results

3.1 Naringenin (2014-06-04)

• Inherits all features from Bika LIMS release/3.1

• Customisations towards CLIA compliance

• Incorrect published results invalidation workflow

• Regulatory Inspector role

• Tighter Patient privacy restrictions

• Life Threat Alert

• Public Results specifications

• Results reports inclusion of relevant QC results

• Patient results history graphs

• Simplified Clinical Case sections for Signs and Symptoms, Patient Condition

• Stream-lined anonymous Patient workflow

0.1 (2012-12-31)

• Create separate product from the Bika-LIMS/health branch.