seppl 0.2.16

Python3 library for parsing pipeline components with their own options.

Simple Entry Point PipeLines (seppl). Python library for parsing pipeline components with their own options.

seppl takes a very light-weight approach to avoid encroaching too much on your code. If you want to, you can add some compatibility checks between the pipeline components with some additional mixins. However, the execution of the pipeline (and potentially moving data between components) is left to you and your code.

Usage and examples can be found here:

https://github.com/waikato-datamining/seppl

Changelog

0.2.16 (2025-04-08)

• filters and writers can be skipped now via the –skip flag, making it easy for external scripts to enable/disable pipeline components

0.2.15 (2025-03-28)

• added support to the seppl.io.Splitter class for keeping item/sample groups together via a split_group regular expression

• backported helper methods for seppl.io.Writer classes for managing splitting

0.2.14 (2025-03-24)

• added resume_from parameter to seppl.io.locate_files method which allows to skip all files preceding this glob

0.2.13 (2025-03-14)

• the resolve_handler and split_args methods now have the partial boolean parameter which determines whether partial matches are accepted or not; off by default as it can interfere with parameters from plugins

0.2.12 (2025-03-13)

• moved placeholder functionality from seppl to seppl.placeholders

• load_user_defined_placeholders now ignores lines that start with #

0.2.11 (2025-03-13)

• added support for placeholders, which can be expanded via the Session object

• plugins supporting placeholders should import the PlaceholderSupporter indicator mixin for automatically adding help on placeholders to the help screen; plugins that support placeholders based on the current input should import the InputBasedPlaceholderSupporter indicator mixin

• placeholder-supporting plugins can use the placeholder_list method in their argparse options

• the load_user_defined_placeholders method allows incorporating custom placeholders for directories

0.2.10 (2025-02-11)

• added alias support to the ClassRegistry class

• added method is_alias(…) and property all_aliases to the Registry and ClassRegistry classes

• extended the enumerate_plugins method to allow flagging of aliases (default: *)

0.2.9 (2025-01-24)

• added support for using partial handler/plugin names (as long as they are unique)

• added experimental support for aliases with AliasSupporter mixin

0.2.8 (2024-12-20)

• added setuptools as dependency

0.2.7 (2024-08-29)

• the seppl.io.locate_files method can support recursive globs now (default is no)

0.2.6 (2024-07-01)

• reworked the execute method, properly distinguishing between stream/batch mode now

0.2.5 (2024-06-18)

• the seppl.io.locate_files method can take a default glob now, which gets appended to inputs that point to directories

0.2.4 (2024-05-06)

• reworked excluding of classes

0.2.3 (2024-05-03)

• _determine_from_entry_points method of ClassListerRegistry class now checks whether there the attributes tuple has any elements (i.e., whether the optional :function_name was provided)

• message X records processed in total now only output at the end

0.2.2 (2024-05-02)

• ClassListerRegistry now safely removes any excluded class listers before locating the classes

0.2.1 (2024-05-02)

• ClassListerRegistry now removes any excluded class listers before locating the classes

0.2.0 (2024-05-01)

• the execute method no longer counts None items returned by the reader

• added the seppl.ClassListerRegistry class that offers a more convenient way of discovering classes via a function that returns a dictionary of superclasses and the associated modules to inspect; with this approach only a single entry_point has to be defined in setup.py, pointing to the class lister module/function

0.1.3 (2024-02-29)

• added the dummy type AnyData which is used by default in the check_compatibility method for a match all (ie can be used for general purpose plugins)

0.1.2 (2024-02-22)

• added methods escape_args and unescape_args (and corresponding command-line tools seppl-escape and seppl-unescape) for escaping/unescaping unicode characters in command-lines to make them copyable across ssh sessions

0.1.1 (2024-02-07)

• check_compatibility method now also checks whether generated class is subclass of accepted classes, to allow for broader accepts() methods

• gcd method now creates a copy of the integer ratio list before processing it

0.1.0 (2024-02-05)

• added basic support for meta-data: MetaDataHandler, get_metadata, add_metadata

• added support for splitting sequences using supplied (int) split ratios

• added session support: Session, SessionHandler

• added I/O super classes: Reader, Writer, StreamWriter, BatchWriter, Filter, MultiFilter

• added support for executing I/O pipelines: Reader, [Filter…], [Writer]

0.0.11 (2023-11-27)

• the DEFAULT placeholder in the environment variable listing the modules now gets expanded to the default modules, making it easier to specify modules in derived projects

• added excluded_modules and excluded_env_modules to Registry class initializer to allow user to specify modules (explicit list or list from env variable) to be excluded from being registered; useful when outputting help for derived modules that shouldn’t output all the base plugins as well.

0.0.10 (2023-11-15)

• the registry now inspects modules when environment modules are present even when it already found plugins (eg default ones)

0.0.9 (2023-11-15)

• the registry now inspects modules when custom modules were supplied even when it already found plugins (eg default ones)

0.0.8 (2023-11-10)

• suppressing help output for unknown args now

0.0.7 (2023-11-09)

• Plugin.parse_args now returns any unparsed arguments that were found

• the args_to_objects method now raises an Exception by default when unknown arguments are encountered for a plugin (can be controlled with the allow_unknown_args parameter)

0.0.6 (2023-10-11)

• enforcement of uniqueness is now checking whether the class names differ before raising an exception.

0.0.5 (2023-10-10)

• added OutputProducer and InputConsumer mixins that can be use for checking the compatibility between pipeline components using the check_compatibility function.

0.0.4 (2023-10-09)

• added support for dynamic mode which only requires listing the superclass of a plugin and the module in which to look for these plugins (slower, but more convenient)

0.0.3 (2023-10-05)

• added generate_entry_points helper method to easily generate the entry_points section for plugins, rather than manually maintaining it

• added generate_help and generate_plugin_usage methods for generating documentation for plugins

0.0.2 (2023-10-04)

• removed old, logging-related code from Plugin class

• added args_to_objects to quickly instantiate plugins from parsed arguments

• added example to README.md and example library (https://github.com/waikato-datamining/seppl-example)

0.0.1 (2023-09-28)

• initial release