seq_align_two_vars
Project description
seq_align_two_vars
General info
This project is created by Jeffrey Cai under supervised by Nathan Ryan, Professor in Mathematics department of Bucknell University.
It is used to align sequences with non-uniform varaibales like time or distance. It is based on the idea of Alexandar Murph(https://github.com/cran/sawnuti). We implemented his method in this python package and not only to analysis non-uniform time intervals, but including analysis of more than one varaibles like both time and dis.
Technologies
Project is created with:
- numpy version: 1.22.4
- pandas version: 1.5.0
- matplotlib version: 3.6.0
- networkx version: 3.0
- scipy version: 1.10.0
- sklearn version: 1.2.1
Data import:
- use make_sample
- read in datafile
- input networks, generate random walk data
Setup
To run this project, install it locally using pip install:
$ pip install seq-align-two-vars
Reference guide
See https://caidog1129.github.io/seq_align_two_vars/seq_align_two_vars.html
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for seq_align_two_vars-0.1.1-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | d68ba035566ac73fe0f3e3e60cbc66c6591ff8141f26835bbde61828d7522e07 |
|
MD5 | 4cc341129bf541e5ba0a3d0284064349 |
|
BLAKE2b-256 | 9dcd966f5fdf1e237229720309008ca6984ce3e76580d3efc9eeb066f6a05a0e |