Sequence and chromatin dataloader for deep learning
Project description
seqchromloader
seqchromloader aims to provide versatile and ready-to-use writer/loader for applying deep learning to bioinformatics study.
Plan to support dataset formats including:
- webdataset (done)
- tfrecord (x)
Training framework support:
- pytorch dataloader (done)
- pytorch-lightning datamodule (done)
- NVIDIA-DALI (x)
Installation
conda (suggested):
mamba install -c bioconda -c conda-forge seqchromloader
or
conda install -c bioconda -c conda-forge seqchromloader
pip
pip install seqchromloader
Usage
For detailed usage, please refer to documentation
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
seqchromloader-0.7.5.tar.gz
(16.9 kB
view details)
Built Distribution
File details
Details for the file seqchromloader-0.7.5.tar.gz.
File metadata
- Download URL: seqchromloader-0.7.5.tar.gz
- Upload date:
- Size: 16.9 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.1 CPython/3.8.16
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 151335f3197a16140106ec55733321f7a01c3571ffaeaa968618cc88ac21393a |
|
| MD5 | 3dea6f18b821d1eb84950babb87c37b9 |
|
| BLAKE2b-256 | cc49677802e122a3a3a4b9c0b952afa77024309c9d8ed79e58b4f2d5bcc8515a |
File details
Details for the file seqchromloader-0.7.5-py3-none-any.whl.
File metadata
- Download URL: seqchromloader-0.7.5-py3-none-any.whl
- Upload date:
- Size: 14.0 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.1 CPython/3.8.16
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | e8070a7a845d390c01f7e7a1a62b81b42be27347934b5cec774fee60aed9a1be |
|
| MD5 | 4aa73c602c914593dccdbd664662d6c5 |
|
| BLAKE2b-256 | e83e7d3a27d39db43c3d966ac0074d93f1746b0f790ca622671c6f5efaa1b2a5 |
