A set of standalone application and pipelines dedicated to NGS (new generation sequencing) analysis
Project description
- Python version:
3.6, 3.7.3, 3.8 (below for now)
- Issues:
- How to cite:
Citations are important for us to carry on developments. For Sequana library (including the pipelines), please use
Cokelaer et al, (2017), ‘Sequana’: a Set of Snakemake NGS pipelines, Journal of Open Source Software, 2(16), 352, JOSS DOI doi:10.21105/joss.00352
The sequana_sphinxext package is used exclusively to provide Sphinx extensions for the Sequana project. Sequana includes a set of pipelines related to NGS (new generation sequencing) including quality control, variant calling, coverage, taxonomy, transcriptomics. Please see the documentation for an up-to-date status and documentation.
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