A set of standalone application and pipelines dedicated to NGS (new generation sequencing) analysis
Maintainers
| Python version: | 3.5 (and 2.7 without snakemake) |
|---|---|
| Online documentation: | |
| Issues and bug reports: | |
| How to cite: | For Sequana in general including the pipelines, please use the JOSS DOI (10.21105/joss.00352) For the genome coverage tool (sequana_coverage): Dimitri Desvillechabrol, Christiane Bouchier, Sean Kennedy, Thomas Cokelaer http://biorxiv.org/content/early/2016/12/08/092478 For Sequanix: Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen, Christiane Bouchier, Jacques van Helden, Sean Kennedy, Thomas Cokelaer http://www.biorxiv.org/content/early/2017/07/12/162701 DOI: https://doi.org/10.1101/162701 |
Sequana includes a set of pipelines related to NGS (new generation sequencing) including quality control, variant calling, coverage, taxonomy, transcriptomics. We also ship Sequanix, a graphical user interface for Snakemake pipelines.
Please see the documentation for an up-to-date status and documentation.
Release History
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| File Name & Checksum SHA256 Checksum Help | Version | File Type | Upload Date |
|---|---|---|---|
| sequana-0.5.1.tar.gz (12.2 MB) Copy SHA256 Checksum SHA256 | – | Source | Sep 20, 2017 |
