A set of standalone application and pipelines dedicated to NGS (new generation sequencing) analysis
3.5 (and 2.7 without snakemake)
|Issues and bug reports:|
|How to cite:||
For Sequana in general including the pipelines, please use the JOSS DOI (10.21105/joss.00352)
For the genome coverage tool (sequana_coverage): Dimitri Desvillechabrol, Christiane Bouchier, Sean Kennedy, Thomas Cokelaer http://biorxiv.org/content/early/2016/12/08/092478
For Sequanix: Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen, Christiane Bouchier, Jacques van Helden, Sean Kennedy, Thomas Cokelaer http://www.biorxiv.org/content/early/2017/07/12/162701 DOI: https://doi.org/10.1101/162701
Sequana includes a set of pipelines related to NGS (new generation sequencing) including quality control, variant calling, coverage, taxonomy, transcriptomics. We also ship Sequanix, a graphical user interface for Snakemake pipelines.
Please see the documentation for an up-to-date status and documentation.