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A set of standalone application and pipelines dedicated to NGS (new generation sequencing) analysis

Project Description
Python version:

3.5 (and 2.7 without snakemake)

Online documentation:
 

On readthedocs

Issues and bug reports:
 

On github

How to cite:

For Sequana in general including the pipelines, please use the JOSS DOI (10.21105/joss.00352)

For the genome coverage tool (sequana_coverage): Dimitri Desvillechabrol, Christiane Bouchier, Sean Kennedy, Thomas Cokelaer http://biorxiv.org/content/early/2016/12/08/092478

For Sequanix: Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen, Christiane Bouchier, Jacques van Helden, Sean Kennedy, Thomas Cokelaer http://www.biorxiv.org/content/early/2017/07/12/162701 DOI: https://doi.org/10.1101/162701

Sequana includes a set of pipelines related to NGS (new generation sequencing) including quality control, variant calling, coverage, taxonomy, transcriptomics. We also ship Sequanix, a graphical user interface for Snakemake pipelines.

Please see the documentation for an up-to-date status and documentation.

Release History

Release History

This version
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0.6.1

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0.6.0

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0.5.2

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0.5.1

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0.5.0

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0.4.2

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0.4.1

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0.4.0

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0.3.0

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0.2.1

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0.2.0

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0.1.21

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0.1.20

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0.1.19

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0.1.18

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0.1.17.1

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0.1.16

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0.1.15

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0.1.14

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0.1.13

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0.1.12

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0.1.11

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0.1.10

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0.1.9

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0.1.8

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0.1.7

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0.1.6

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0.1.5

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0.1.4

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0.1.2

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0.1.1

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0.1.0

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0.0.3

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0.0.2

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
sequana-0.6.1.tar.gz (12.0 MB) Copy SHA256 Checksum SHA256 Source Oct 25, 2017

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