A set of standalone application and pipelines dedicated to NGS (new generation sequencing) analysis
|Python version:||3.5 (and 2.7 without snakemake)|
|Issues and bug reports:|
|How to cite:||Desvillechabrol D, Bouchier C, Cokelaer T and Kennedy S. Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis [v1; no peer reviewed]. F1000Research 2016, 5:1767 (poster) (doi: 10.7490/f1000research.1112656.1)|
Sequana includes a set of pipelines related to NGS (new generation sequencing) including quality control, variant calling, coverage, taxonomy…
Please see the documentation for an up-to-date status and documentation.