- Python version:
3.7, 3.8
- Documentation:
- Issues:
- How to cite:
Citations are important for us to carry on developments. For Sequana library (including the pipelines), please use
Cokelaer et al, (2017), ‘Sequana’: a Set of Snakemake NGS pipelines, Journal of Open Source Software, 2(16), 352, JOSS DOI doi:10.21105/joss.00352
For the genome coverage tool (sequana_coverage): Dimitri Desvillechabrol, Christiane Bouchier, Sean Kennedy, Thomas Cokelaer http://biorxiv.org/content/early/2016/12/08/092478
For Sequanix: Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen, Christiane Bouchier, Jacques van Helden, Sean Kennedy, Thomas Cokelaer. Sequanix: A Dynamic Graphical Interface for Snakemake Workflows Bioinformatics, bty034, https://doi.org/10.1093/bioinformatics/bty034 Also available on bioRxiv (DOI: https://doi.org/10.1101/162701)
Sequana includes a set of pipelines related to NGS (new generation sequencing) including quality control, variant calling, coverage, taxonomy, transcriptomics. We also ship Sequanix, a graphical user interface for Snakemake pipelines.
pipeline or tools |
Latest Pypi verison |
Test passing |
not on pypi |
||
Please see the documentation for an up-to-date status and documentation.
Changelog
Version |
Description |
|---|---|
0.12.4 |
|
1 maintainer
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
File details
Details for the file sequana-0.12.4.tar.gz.
File metadata
- Download URL: sequana-0.12.4.tar.gz
- Upload date:
- Size: 13.6 MB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.4.2 importlib_metadata/4.8.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
b45c166e54d739c2ec0df14b5a9dc498526f0f02c79c2bb8b53aee7ace9fe1be
|
|
| MD5 |
4cce15b840ae2f5ba4fd0f95fbe4e16c
|
|
| BLAKE2b-256 |
927fdaa242ae8422669d85db798bfa31e34e7a8a722f7a39941d4509a07117cc
|
