https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square) https://badge.fury.io/py/sequana.svg https://travis-ci.org/sequana/sequana.svg?branch=master https://coveralls.io/repos/github/sequana/sequana/badge.svg?branch=master Documentation Status JOSS (journal of open source software) DOI https://badges.gitter.im/sequana/sequana.svg
Python version:

3.5, 3.6

Online documentation:

On readthedocs

Issues and bug reports:

On github

How to cite:

For Sequana in general including the pipelines, please use the JOSS DOI (10.21105/joss.00352)

For the genome coverage tool (sequana_coverage): Dimitri Desvillechabrol, Christiane Bouchier, Sean Kennedy, Thomas Cokelaer http://biorxiv.org/content/early/2016/12/08/092478

For Sequanix: Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen, Christiane Bouchier, Jacques van Helden, Sean Kennedy, Thomas Cokelaer. Sequanix: A Dynamic Graphical Interface for Snakemake Workflows Bioinformatics, bty034, https://doi.org/10.1093/bioinformatics/bty034 Also available on bioRxiv (DOI: https://doi.org/10.1101/162701)

Sequana includes a set of pipelines related to NGS (new generation sequencing) including quality control, variant calling, coverage, taxonomy, transcriptomics. We also ship Sequanix, a graphical user interface for Snakemake pipelines.

Please see the documentation for an up-to-date status and documentation.

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (0.23)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for cokelaer from gravatar.com cokelaer

Credits

Author: yourname

License

BSD License (new BSD)

Classifiers

Report project as malware

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

sequana-0.6.5.post3.tar.gz (12.6 MB view details)

Uploaded Source

File details

Details for the file sequana-0.6.5.post3.tar.gz.

File metadata

  • Download URL: sequana-0.6.5.post3.tar.gz
  • Upload date:
  • Size: 12.6 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? No

File hashes

Hashes for sequana-0.6.5.post3.tar.gz
Algorithm Hash digest
SHA256 1aeab4823a6e62fdd526889e00e1d548a70e2b7bee4bf6a1ed76d6d8917fb1a2
MD5 54d2d9e9b72853d43479d2470ac481be
BLAKE2b-256 74dddb06102f885ecc1ac569b3d0bf40798402cfe2d0ed0162c363580aff9979

See more details on using hashes here.

Release history Release notifications | RSS feed

0.23

0.22

0.21.2

0.21.1

0.21.0

0.20.0

0.19.6

0.19.5

0.19.4

0.19.3

0.19.2

0.19.1

0.19.0

0.18.0

0.17.3

0.17.2

0.17.1

0.17.0

0.16.11

0.16.10

0.16.9

0.16.8

0.16.7

0.16.6

0.16.5

0.16.4

0.16.3

0.16.2

0.16.1

0.16.0

0.15.4

0.15.3

0.15.2

0.15.1

0.15.0

0.14.6

0.14.5

0.14.4

0.14.3

0.14.2

0.14.1

0.14.0

0.13.2

0.13.1

0.13.0

0.12.7

0.12.6

0.12.5

0.12.4

0.12.3

0.12.2

0.12.1

0.12.0

0.11.1

0.11.0

0.10.0

0.9.8

0.9.7

0.9.6

0.9.5

0.9.4

0.9.3

0.9.2

0.9.1

0.9.0

0.8.6

0.8.5

0.8.4

0.8.3

0.8.2

0.8.1

0.8.0

0.7.1

0.7.0

This release

0.6.5.post3

0.6.5.post2

0.6.5.post1

0.6.4

0.6.3.post1

0.6.3

0.6.2

0.6.1

0.6.0

0.5.2

0.5.1

0.5.0

0.4.2

0.4.1

0.4.0

0.3.0

0.2.1

0.2.0

0.1.21

0.1.20

0.1.19

0.1.18

0.1.17.1

0.1.16

0.1.15

0.1.14

0.1.13

0.1.12

0.1.11

0.1.10

0.1.9

0.1.8

0.1.7

0.1.6

0.1.5

0.1.4

0.1.2

0.1.1

0.1.0

0.0.3

0.0.2

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page