https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square) https://badge.fury.io/py/sequana.svg https://travis-ci.org/sequana/sequana.svg?branch=master https://coveralls.io/repos/github/sequana/sequana/badge.svg?branch=master Documentation Status JOSS (journal of open source software) DOI
Python version:

3.6, 3.7.3 (below for now)

Online documentation:

On readthedocs

Issues and bug reports:

On github

How to cite:

For Sequana in general including the pipelines, please use the JOSS DOI (10.21105/joss.00352)

For the genome coverage tool (sequana_coverage): Dimitri Desvillechabrol, Christiane Bouchier, Sean Kennedy, Thomas Cokelaer http://biorxiv.org/content/early/2016/12/08/092478

For Sequanix: Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen, Christiane Bouchier, Jacques van Helden, Sean Kennedy, Thomas Cokelaer. Sequanix: A Dynamic Graphical Interface for Snakemake Workflows Bioinformatics, bty034, https://doi.org/10.1093/bioinformatics/bty034 Also available on bioRxiv (DOI: https://doi.org/10.1101/162701)

Sequana includes a set of pipelines related to NGS (new generation sequencing) including quality control, variant calling, coverage, taxonomy, transcriptomics. We also ship Sequanix, a graphical user interface for Snakemake pipelines.

Please see the documentation for an up-to-date status and documentation.

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (0.23)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for cokelaer from gravatar.com cokelaer

Credits

Author/Maintainer: Thomas Cokelaer

License

BSD License (new BSD)

Tags

NGS snakemake

Classifiers

Report project as malware

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Release history Release notifications | RSS feed

0.23

0.22

0.21.2

0.21.1

0.21.0

0.20.0

0.19.6

0.19.5

0.19.4

0.19.3

0.19.2

0.19.1

0.19.0

0.18.0

0.17.3

0.17.2

0.17.1

0.17.0

0.16.11

0.16.10

0.16.9

0.16.8

0.16.7

0.16.6

0.16.5

0.16.4

0.16.3

0.16.2

0.16.1

0.16.0

0.15.4

0.15.3

0.15.2

0.15.1

0.15.0

0.14.6

0.14.5

0.14.4

0.14.3

0.14.2

0.14.1

0.14.0

0.13.2

0.13.1

0.13.0

0.12.7

0.12.6

0.12.5

0.12.4

0.12.3

0.12.2

0.12.1

0.12.0

0.11.1

0.11.0

0.10.0

0.9.8

0.9.7

0.9.6

0.9.5

0.9.4

0.9.3

0.9.2

0.9.1

0.9.0

0.8.6

0.8.5

This release

0.8.4

0.8.3

0.8.2

0.8.1

0.8.0

0.7.1

0.7.0

0.6.5.post3

0.6.5.post2

0.6.5.post1

0.6.4

0.6.3.post1

0.6.3

0.6.2

0.6.1

0.6.0

0.5.2

0.5.1

0.5.0

0.4.2

0.4.1

0.4.0

0.3.0

0.2.1

0.2.0

0.1.21

0.1.20

0.1.19

0.1.18

0.1.17.1

0.1.16

0.1.15

0.1.14

0.1.13

0.1.12

0.1.11

0.1.10

0.1.9

0.1.8

0.1.7

0.1.6

0.1.5

0.1.4

0.1.2

0.1.1

0.1.0

0.0.3

0.0.2

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